fast.genomicscompare 6,575 genera of bacteria & archaea

 

UBA10438 sp002426145 Ejby_18-Q3-R6-50_BAT3C.119

Genome identifier: GCA_016707005.1

NCBI assembly name: ASM1670700v1

GTDB taxonomy: Bacteria, Bacteroidota, Kapaibacteriia, Kapaibacteriales, Kapaibacteriaceae, UBA10438, UBA10438 sp002426145

NCBI taxonomy: Bacteria, Ignavibacteriota, Ignavibacteria

Scaffolds: 5

Genes: 2,898 Protein-coding: 2,823 RNAs: 52 pseudogenes: 23

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JADJIQ010000001.1 MAG: Ignavibacteria bacterium isolate Ejby_18-Q3-R6-50_BAT3C.119 tig00000278-10-7162470, whole genome shotgun sequence 716,835
JADJIQ010000002.1 MAG: Ignavibacteria bacterium isolate Ejby_18-Q3-R6-50_BAT3C.119 tig00000462-10-8768880, whole genome shotgun sequence 876,739
JADJIQ010000003.1 MAG: Ignavibacteria bacterium isolate Ejby_18-Q3-R6-50_BAT3C.119 tig00001452-10-258510, whole genome shotgun sequence 25,428
JADJIQ010000004.1 MAG: Ignavibacteria bacterium isolate Ejby_18-Q3-R6-50_BAT3C.119 tig00001473-10-4458680, whole genome shotgun sequence 445,555
JADJIQ010000005.1 MAG: Ignavibacteria bacterium isolate Ejby_18-Q3-R6-50_BAT3C.119 tig00832030-10-14361700, whole genome shotgun sequence 1,437,541

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory