fast.genomicscompare 6,575 genera of bacteria & archaea

 

JAGDMK01 sp016707525 Ega_18-Q3-R5-49_BATAC.118

Genome identifier: GCA_016707525.1

NCBI assembly name: ASM1670752v1

GTDB taxonomy: Bacteria, Bacteroidota, UBA10030, UBA10030, UBA6906, JAGDMK01, JAGDMK01 sp016707525

NCBI taxonomy: Bacteria, Ignavibacteriota

Scaffolds: 21

Genes: 4,309 Protein-coding: 4,122 RNAs: 52 pseudogenes: 135

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JADJHP010000001.1 MAG: Ignavibacteriae bacterium isolate Ega_18-Q3-R5-49_BATAC.118 tig00000655-10-8431380, whole genome shotgun sequence 844,969
JADJHP010000002.1 MAG: Ignavibacteriae bacterium isolate Ega_18-Q3-R5-49_BATAC.118 tig00000981-10-6005640, whole genome shotgun sequence 601,915
JADJHP010000003.1 MAG: Ignavibacteriae bacterium isolate Ega_18-Q3-R5-49_BATAC.118 tig00001008-10-4735620, whole genome shotgun sequence 474,957
JADJHP010000004.1 MAG: Ignavibacteriae bacterium isolate Ega_18-Q3-R5-49_BATAC.118 tig00001057-10-5584310, whole genome shotgun sequence 557,486
JADJHP010000005.1 MAG: Ignavibacteriae bacterium isolate Ega_18-Q3-R5-49_BATAC.118 tig00001327-10-235880, whole genome shotgun sequence 23,194
JADJHP010000006.1 MAG: Ignavibacteriae bacterium isolate Ega_18-Q3-R5-49_BATAC.118 tig00001692-10-4072800, whole genome shotgun sequence 407,323
JADJHP010000007.1 MAG: Ignavibacteriae bacterium isolate Ega_18-Q3-R5-49_BATAC.118 tig00002005-10-2448470, whole genome shotgun sequence 245,113
JADJHP010000008.1 MAG: Ignavibacteriae bacterium isolate Ega_18-Q3-R5-49_BATAC.118 tig00002061-10-3410940, whole genome shotgun sequence 341,966
JADJHP010000009.1 MAG: Ignavibacteriae bacterium isolate Ega_18-Q3-R5-49_BATAC.118 tig00002674-10-2409220, whole genome shotgun sequence 241,378
JADJHP010000010.1 MAG: Ignavibacteriae bacterium isolate Ega_18-Q3-R5-49_BATAC.118 tig00002696-10-2498660, whole genome shotgun sequence 250,601
JADJHP010000011.1 MAG: Ignavibacteriae bacterium isolate Ega_18-Q3-R5-49_BATAC.118 tig00002874-10-2237660, whole genome shotgun sequence 225,151
JADJHP010000012.1 MAG: Ignavibacteriae bacterium isolate Ega_18-Q3-R5-49_BATAC.118 tig00003181-10-1549110, whole genome shotgun sequence 155,029
JADJHP010000013.1 MAG: Ignavibacteriae bacterium isolate Ega_18-Q3-R5-49_BATAC.118 tig00003228-10-224170, whole genome shotgun sequence 22,460
JADJHP010000014.1 MAG: Ignavibacteriae bacterium isolate Ega_18-Q3-R5-49_BATAC.118 tig00004572-10-1700500, whole genome shotgun sequence 169,958
JADJHP010000015.1 MAG: Ignavibacteriae bacterium isolate Ega_18-Q3-R5-49_BATAC.118 tig00004961-10-1479240, whole genome shotgun sequence 147,762
JADJHP010000016.1 MAG: Ignavibacteriae bacterium isolate Ega_18-Q3-R5-49_BATAC.118 tig00006475-10-1105200, whole genome shotgun sequence 110,768
JADJHP010000017.1 MAG: Ignavibacteriae bacterium isolate Ega_18-Q3-R5-49_BATAC.118 tig00007351-10-1420720, whole genome shotgun sequence 143,260
JADJHP010000018.1 MAG: Ignavibacteriae bacterium isolate Ega_18-Q3-R5-49_BATAC.118 tig00011574-10-314470, whole genome shotgun sequence 31,286
JADJHP010000019.1 MAG: Ignavibacteriae bacterium isolate Ega_18-Q3-R5-49_BATAC.118 tig00192685-10-183780, whole genome shotgun sequence 18,393
JADJHP010000020.1 MAG: Ignavibacteriae bacterium isolate Ega_18-Q3-R5-49_BATAC.118 tig00742190-10-82890, whole genome shotgun sequence 8,318
JADJHP010000021.1 MAG: Ignavibacteriae bacterium isolate Ega_18-Q3-R5-49_BATAC.118 tig00742191-10-1759240, whole genome shotgun sequence 175,660

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory