fast.genomicscompare 6,575 genera of bacteria & archaea

 

UBA4417 sp016707705 Damh_18-Q3-R51-60_MAXAC.107

Genome identifier: GCA_016707705.1

NCBI assembly name: ASM1670770v1

GTDB taxonomy: Bacteria, Bacteroidota, Bacteroidia, Bacteroidales, UBA4417, UBA4417, UBA4417 sp016707705

NCBI taxonomy: Bacteria, Bacteroidota, Bacteroidia, Bacteroidales

Scaffolds: 57

Genes: 3,982 Protein-coding: 3,804 RNAs: 49 pseudogenes: 129

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JADJHD010000001.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00001274-10-4671120, whole genome shotgun sequence 469,109
JADJHD010000002.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00001878-10-198420, whole genome shotgun sequence 19,954
JADJHD010000003.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00002365-10-2222520, whole genome shotgun sequence 222,435
JADJHD010000004.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00002485-10-2405980, whole genome shotgun sequence 241,627
JADJHD010000005.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00003018-10-3024640, whole genome shotgun sequence 301,989
JADJHD010000006.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00003098-10-2321130, whole genome shotgun sequence 232,639
JADJHD010000007.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00003308-10-2748980, whole genome shotgun sequence 275,904
JADJHD010000008.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00003645-10-1992910, whole genome shotgun sequence 200,028
JADJHD010000009.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00003983-10-162860, whole genome shotgun sequence 16,165
JADJHD010000010.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00004479-10-1626290, whole genome shotgun sequence 162,768
JADJHD010000011.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00004516-10-1267000, whole genome shotgun sequence 126,534
JADJHD010000012.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00004775-10-1610760, whole genome shotgun sequence 161,338
JADJHD010000013.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00005153-10-1461690, whole genome shotgun sequence 146,373
JADJHD010000014.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00005158-10-1310050, whole genome shotgun sequence 131,469
JADJHD010000015.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00005482-10-1719030, whole genome shotgun sequence 172,665
JADJHD010000016.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00005678-10-1855200, whole genome shotgun sequence 186,204
JADJHD010000017.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00005967-10-1427130, whole genome shotgun sequence 143,005
JADJHD010000018.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00006206-10-1117250, whole genome shotgun sequence 111,711
JADJHD010000019.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00006282-10-652810, whole genome shotgun sequence 65,496
JADJHD010000020.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00006294-10-1452860, whole genome shotgun sequence 145,612
JADJHD010000021.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00007766-10-909380, whole genome shotgun sequence 90,909
JADJHD010000022.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00008138-10-948370, whole genome shotgun sequence 95,172
JADJHD010000023.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00008676-10-965710, whole genome shotgun sequence 97,040
JADJHD010000024.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00008714-10-619260, whole genome shotgun sequence 62,286
JADJHD010000025.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00008795-10-1061280, whole genome shotgun sequence 106,483
JADJHD010000026.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00010561-10-610140, whole genome shotgun sequence 61,177
JADJHD010000027.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00011218-10-65730, whole genome shotgun sequence 6,614
JADJHD010000028.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00011373-10-444740, whole genome shotgun sequence 44,669
JADJHD010000029.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00012192-10-870660, whole genome shotgun sequence 87,382
JADJHD010000030.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00012226-10-88100, whole genome shotgun sequence 8,778
JADJHD010000031.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00012569-10-972100, whole genome shotgun sequence 97,285
JADJHD010000032.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00012942-10-118120, whole genome shotgun sequence 11,342
JADJHD010000033.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00013777-10-506900, whole genome shotgun sequence 50,814
JADJHD010000034.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00014174-10-388220, whole genome shotgun sequence 39,037
JADJHD010000035.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00015605-10-575230, whole genome shotgun sequence 57,830
JADJHD010000036.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00016018-10-225690, whole genome shotgun sequence 22,678
JADJHD010000037.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00018017-10-506350, whole genome shotgun sequence 50,779
JADJHD010000038.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00018152-10-397960, whole genome shotgun sequence 40,083
JADJHD010000039.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00018561-10-326750, whole genome shotgun sequence 32,836
JADJHD010000040.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00018689-10-396820, whole genome shotgun sequence 39,914
JADJHD010000041.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00027470-10-81940, whole genome shotgun sequence 8,251
JADJHD010000042.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00030190-10-63530, whole genome shotgun sequence 6,407
JADJHD010000043.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00032825-10-76820, whole genome shotgun sequence 7,736
JADJHD010000044.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00041991-10-180380, whole genome shotgun sequence 18,130
JADJHD010000045.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00042883-10-207210, whole genome shotgun sequence 20,851
JADJHD010000046.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00052890-10-150790, whole genome shotgun sequence 15,146
JADJHD010000047.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00074524-10-77490, whole genome shotgun sequence 7,494
JADJHD010000048.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00082596-10-73850, whole genome shotgun sequence 7,421
JADJHD010000049.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00175434-10-121500, whole genome shotgun sequence 12,166
JADJHD010000050.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00835133-10-322510, whole genome shotgun sequence 31,726
JADJHD010000051.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00835134-10-1702080, whole genome shotgun sequence 170,170
JADJHD010000052.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00835274-10-335870, whole genome shotgun sequence 33,735
JADJHD010000053.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00835620-40160-593810, whole genome shotgun sequence 55,425
JADJHD010000054.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00837667-10-179410, whole genome shotgun sequence 17,897
JADJHD010000055.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00837668-10-226750, whole genome shotgun sequence 22,482
JADJHD010000056.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00838486-10-84820, whole genome shotgun sequence 8,389
JADJHD010000057.1 MAG: Bacteroidales bacterium isolate Damh_18-Q3-R51-60_MAXAC.107 tig00838883-10-129140, whole genome shotgun sequence 13,159

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory