fast.genomicscompare 6,575 genera of bacteria & archaea

 

UBA2376 sp016707895 Damh_18-Q3-R51-60_BATAC.454

Genome identifier: GCA_016707895.1

NCBI assembly name: ASM1670789v1

GTDB taxonomy: Bacteria, Myxococcota, Polyangia, Haliangiales, Haliangiaceae, UBA2376, UBA2376 sp016707895

NCBI taxonomy: Bacteria, Myxococcota, Myxococcia, Myxococcales

Scaffolds: 39

Genes: 8,330 Protein-coding: 8,131 RNAs: 83 pseudogenes: 116

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JADJGV010000001.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00000239-10-11092340, whole genome shotgun sequence 1,107,269
JADJGV010000002.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00000502-10-7904850, whole genome shotgun sequence 790,440
JADJGV010000003.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00000580-10-6840250, whole genome shotgun sequence 684,783
JADJGV010000004.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00000603-10-236140, whole genome shotgun sequence 23,642
JADJGV010000005.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00000823-10-5479100, whole genome shotgun sequence 549,607
JADJGV010000006.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00000927-10-4618090, whole genome shotgun sequence 462,318
JADJGV010000007.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00001072-10-3894900, whole genome shotgun sequence 389,589
JADJGV010000008.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00001127-10-4779990, whole genome shotgun sequence 478,221
JADJGV010000009.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00001203-10-3918440, whole genome shotgun sequence 392,580
JADJGV010000010.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00001225-10-3980460, whole genome shotgun sequence 398,362
JADJGV010000011.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00001369-10-3297660, whole genome shotgun sequence 330,091
JADJGV010000012.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00001405-10-3440920, whole genome shotgun sequence 344,524
JADJGV010000013.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00001452-10-3594700, whole genome shotgun sequence 360,182
JADJGV010000014.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00001666-10-3075040, whole genome shotgun sequence 310,077
JADJGV010000015.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00001692-10-2925700, whole genome shotgun sequence 292,834
JADJGV010000016.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00001914-10-162120, whole genome shotgun sequence 16,233
JADJGV010000017.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00002016-10-156030, whole genome shotgun sequence 15,624
JADJGV010000018.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00002084-10-424400, whole genome shotgun sequence 42,523
JADJGV010000019.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00002725-10-2335090, whole genome shotgun sequence 234,258
JADJGV010000020.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00004471-10-1629150, whole genome shotgun sequence 163,180
JADJGV010000021.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00005914-10-891970, whole genome shotgun sequence 89,361
JADJGV010000022.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00006616-10-845490, whole genome shotgun sequence 84,652
JADJGV010000023.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00006678-10-1469910, whole genome shotgun sequence 147,221
JADJGV010000024.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00009261-10-483770, whole genome shotgun sequence 48,461
JADJGV010000025.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00014529-10-294180, whole genome shotgun sequence 29,457
JADJGV010000026.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00015321-10-630720, whole genome shotgun sequence 63,148
JADJGV010000027.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00019163-10-258220, whole genome shotgun sequence 25,911
JADJGV010000028.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00020281-10-391970, whole genome shotgun sequence 39,001
JADJGV010000029.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00020397-10-248130, whole genome shotgun sequence 24,687
JADJGV010000030.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00022006-10-304560, whole genome shotgun sequence 30,573
JADJGV010000031.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00029585-10-271930, whole genome shotgun sequence 27,279
JADJGV010000032.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00049652-10-153490, whole genome shotgun sequence 15,401
JADJGV010000033.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00105619-10-69470, whole genome shotgun sequence 6,978
JADJGV010000034.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00834929-10-9408300, whole genome shotgun sequence 941,544
JADJGV010000035.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00834930-10-134160, whole genome shotgun sequence 13,442
JADJGV010000036.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00834943-10-115090, whole genome shotgun sequence 11,229
JADJGV010000037.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00834944-10-6329580, whole genome shotgun sequence 633,154
JADJGV010000038.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00835088-10-1030230, whole genome shotgun sequence 102,929
JADJGV010000039.1 MAG: Myxococcales bacterium isolate Damh_18-Q3-R51-60_BATAC.454 tig00836487-10-191810, whole genome shotgun sequence 19,208

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory