fast.genomicscompare 6,575 genera of bacteria & archaea

 

FEB-12 sp016708025 Damh_18-Q3-R51-60_BATAC.282

Genome identifier: GCA_016708025.1

NCBI assembly name: ASM1670802v1

GTDB taxonomy: Bacteria, Zixibacteria, MSB-5A5, GN15, FEB-12, FEB-12, FEB-12 sp016708025

NCBI taxonomy: Bacteria

Scaffolds: 6

Genes: 3,284 Protein-coding: 3,202 RNAs: 52 pseudogenes: 30

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JADJGQ010000001.1 MAG: bacterium isolate Damh_18-Q3-R51-60_BATAC.282 tig00000295-10-14878540, whole genome shotgun sequence 1,486,155
JADJGQ010000002.1 MAG: bacterium isolate Damh_18-Q3-R51-60_BATAC.282 tig00000367-10-11632330, whole genome shotgun sequence 1,164,281
JADJGQ010000003.1 MAG: bacterium isolate Damh_18-Q3-R51-60_BATAC.282 tig00001496-10-5127340, whole genome shotgun sequence 513,391
JADJGQ010000004.1 MAG: bacterium isolate Damh_18-Q3-R51-60_BATAC.282 tig00002941-10-3454010, whole genome shotgun sequence 345,829
JADJGQ010000005.1 MAG: bacterium isolate Damh_18-Q3-R51-60_BATAC.282 tig00003205-10-2683230, whole genome shotgun sequence 269,009
JADJGQ010000006.1 MAG: bacterium isolate Damh_18-Q3-R51-60_BATAC.282 tig00834940-10-266660, whole genome shotgun sequence 26,424

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory