fast.genomicscompare 6,575 genera of bacteria & archaea

 

LD21 sp016709865 EsbW_18-Q3-R4-48_BAT3C.307

Genome identifier: GCA_016709865.1

NCBI assembly name: ASM1670986v1

GTDB taxonomy: Bacteria, Bacteroidota, Bacteroidia, Bacteroidales, VadinHA17, LD21, LD21 sp016709865

NCBI taxonomy: Bacteria, Bacteroidota, Bacteroidia, Bacteroidales

Scaffolds: 6

Genes: 3,680 Protein-coding: 3,558 RNAs: 50 pseudogenes: 72

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JADJLX010000001.1 MAG: Bacteroidales bacterium isolate EsbW_18-Q3-R4-48_BAT3C.307 tig00001750-10-4325450, whole genome shotgun sequence 432,764
JADJLX010000002.1 MAG: Bacteroidales bacterium isolate EsbW_18-Q3-R4-48_BAT3C.307 tig00002061-10-8614990, whole genome shotgun sequence 862,045
JADJLX010000003.1 MAG: Bacteroidales bacterium isolate EsbW_18-Q3-R4-48_BAT3C.307 tig00002509-10-6488670, whole genome shotgun sequence 648,857
JADJLX010000004.1 MAG: Bacteroidales bacterium isolate EsbW_18-Q3-R4-48_BAT3C.307 tig00005871-10-1077440, whole genome shotgun sequence 106,855
JADJLX010000005.1 MAG: Bacteroidales bacterium isolate EsbW_18-Q3-R4-48_BAT3C.307 tig00250445-10-19376960, whole genome shotgun sequence 1,938,374
JADJLX010000006.1 MAG: Bacteroidales bacterium isolate EsbW_18-Q3-R4-48_BAT3C.307 tig00250447-10-4922140, whole genome shotgun sequence 492,912

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory