fast.genomicscompare 6,575 genera of bacteria & archaea

 

H1-PLA3 sp016710275 Kalu_18-Q3-R12-55_MAXAC.193

Genome identifier: GCA_016710275.1

NCBI assembly name: ASM1671027v1

GTDB taxonomy: Bacteria, Planctomycetota, Phycisphaerae, UBA1845, Fen-1342, H1-PLA3, H1-PLA3 sp016710275

NCBI taxonomy: Bacteria, Planctomycetota, Phycisphaerae, Phycisphaerales

Scaffolds: 6

Genes: 3,628 Protein-coding: 3,512 RNAs: 57 pseudogenes: 59

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JADJXS010000001.1 MAG: Phycisphaerales bacterium isolate Kalu_18-Q3-R12-55_MAXAC.193 tig00000220-10-42251120, whole genome shotgun sequence 4,242,598
JADJXS010000002.1 MAG: Phycisphaerales bacterium isolate Kalu_18-Q3-R12-55_MAXAC.193 tig00006382-10-423050, whole genome shotgun sequence 42,318
JADJXS010000003.1 MAG: Phycisphaerales bacterium isolate Kalu_18-Q3-R12-55_MAXAC.193 tig00012161-10-239850, whole genome shotgun sequence 24,093
JADJXS010000004.1 MAG: Phycisphaerales bacterium isolate Kalu_18-Q3-R12-55_MAXAC.193 tig00014075-10-317220, whole genome shotgun sequence 31,835
JADJXS010000005.1 MAG: Phycisphaerales bacterium isolate Kalu_18-Q3-R12-55_MAXAC.193 tig00021657-10-467370, whole genome shotgun sequence 47,030
JADJXS010000006.1 MAG: Phycisphaerales bacterium isolate Kalu_18-Q3-R12-55_MAXAC.193 tig00033257-10-131860, whole genome shotgun sequence 13,206

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory