fast.genomicscompare 6,575 genera of bacteria & archaea

 

JADJTL01 sp016711215 Hirt_18-Q3-R61-65_BAT3C.274

Genome identifier: GCA_016711215.1

NCBI assembly name: ASM1671121v1

GTDB taxonomy: Bacteria, Myxococcota, Polyangia, GCA-2747355, GCA-2747355, JADJTL01, JADJTL01 sp016711215

NCBI taxonomy: Bacteria, Pseudomonadota

Scaffolds: 11

Genes: 3,324 Protein-coding: 3,210 RNAs: 52 pseudogenes: 62

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JADJTL010000001.1 MAG: Proteobacteria bacterium isolate Hirt_18-Q3-R61-65_BAT3C.274 tig00001291-10-13242390, whole genome shotgun sequence 1,326,613
JADJTL010000002.1 MAG: Proteobacteria bacterium isolate Hirt_18-Q3-R61-65_BAT3C.274 tig00001721-10-10109740, whole genome shotgun sequence 1,012,388
JADJTL010000003.1 MAG: Proteobacteria bacterium isolate Hirt_18-Q3-R61-65_BAT3C.274 tig00002673-10-7731080, whole genome shotgun sequence 773,985
JADJTL010000004.1 MAG: Proteobacteria bacterium isolate Hirt_18-Q3-R61-65_BAT3C.274 tig00008380-10-2863620, whole genome shotgun sequence 286,803
JADJTL010000005.1 MAG: Proteobacteria bacterium isolate Hirt_18-Q3-R61-65_BAT3C.274 tig00010150-10-2964170, whole genome shotgun sequence 295,942
JADJTL010000006.1 MAG: Proteobacteria bacterium isolate Hirt_18-Q3-R61-65_BAT3C.274 tig00012492-10-1769100, whole genome shotgun sequence 177,270
JADJTL010000007.1 MAG: Proteobacteria bacterium isolate Hirt_18-Q3-R61-65_BAT3C.274 tig00013038-10-2151620, whole genome shotgun sequence 215,488
JADJTL010000008.1 MAG: Proteobacteria bacterium isolate Hirt_18-Q3-R61-65_BAT3C.274 tig00029852-10-600920, whole genome shotgun sequence 60,271
JADJTL010000009.1 MAG: Proteobacteria bacterium isolate Hirt_18-Q3-R61-65_BAT3C.274 tig00053228-10-427820, whole genome shotgun sequence 42,668
JADJTL010000010.1 MAG: Proteobacteria bacterium isolate Hirt_18-Q3-R61-65_BAT3C.274 tig00094078-10-41960, whole genome shotgun sequence 4,186
JADJTL010000011.1 MAG: Proteobacteria bacterium isolate Hirt_18-Q3-R61-65_BAT3C.274 tig00107893-10-244850, whole genome shotgun sequence 24,511

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory