fast.genomicscompare 6,575 genera of bacteria & archaea

 

JAAFHV01 sp016712525 Fred_18-Q3-R57-64_MAXAC.347

Genome identifier: GCA_016712525.1

NCBI assembly name: ASM1671252v1

GTDB taxonomy: Bacteria, Myxococcota, Polyangia, Polyangiales, Polyangiaceae, JAAFHV01, JAAFHV01 sp016712525

NCBI taxonomy: Bacteria, Myxococcota, Myxococcia, Myxococcales

Scaffolds: 10

Genes: 7,423 Protein-coding: 7,277 RNAs: 64 pseudogenes: 82

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JADJQX010000001.1 MAG: Myxococcales bacterium isolate Fred_18-Q3-R57-64_MAXAC.347 tig00000646-10-27274520, whole genome shotgun sequence 2,729,851
JADJQX010000002.1 MAG: Myxococcales bacterium isolate Fred_18-Q3-R57-64_MAXAC.347 tig00000675-10-251250, whole genome shotgun sequence 25,136
JADJQX010000003.1 MAG: Myxococcales bacterium isolate Fred_18-Q3-R57-64_MAXAC.347 tig00001761-10-111090, whole genome shotgun sequence 11,114
JADJQX010000004.1 MAG: Myxococcales bacterium isolate Fred_18-Q3-R57-64_MAXAC.347 tig00007930-10-291310, whole genome shotgun sequence 28,919
JADJQX010000005.1 MAG: Myxococcales bacterium isolate Fred_18-Q3-R57-64_MAXAC.347 tig00060271-10-114690, whole genome shotgun sequence 11,563
JADJQX010000006.1 MAG: Myxococcales bacterium isolate Fred_18-Q3-R57-64_MAXAC.347 tig00350871-10-12006810, whole genome shotgun sequence 1,201,839
JADJQX010000007.1 MAG: Myxococcales bacterium isolate Fred_18-Q3-R57-64_MAXAC.347 tig00350873-10-29590610, whole genome shotgun sequence 2,961,073
JADJQX010000008.1 MAG: Myxococcales bacterium isolate Fred_18-Q3-R57-64_MAXAC.347 tig00351148-10-17453120, whole genome shotgun sequence 1,747,039
JADJQX010000009.1 MAG: Myxococcales bacterium isolate Fred_18-Q3-R57-64_MAXAC.347 tig01546538-10-389930, whole genome shotgun sequence 39,038
JADJQX010000010.1 MAG: Myxococcales bacterium isolate Fred_18-Q3-R57-64_MAXAC.347 tig01549023-34310-86180, whole genome shotgun sequence 5,195

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory