fast.genomicscompare 6,575 genera of bacteria & archaea

 

UBA7239 sp016713115 Fred_18-Q3-R57-64_BATAC.644

Genome identifier: GCA_016713115.1

NCBI assembly name: ASM1671311v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales, UBA7239, UBA7239, UBA7239 sp016713115

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Cellvibrionales

Scaffolds: 3

Genes: 2,473 Protein-coding: 2,274 RNAs: 50 pseudogenes: 149

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JADJPU010000001.1 MAG: Cellvibrionales bacterium isolate Fred_18-Q3-R57-64_BATAC.644 tig00000788-10-24304590, whole genome shotgun sequence 2,432,191
JADJPU010000002.1 MAG: Cellvibrionales bacterium isolate Fred_18-Q3-R57-64_BATAC.644 tig00000795-10-322690, whole genome shotgun sequence 32,267
JADJPU010000003.1 MAG: Cellvibrionales bacterium isolate Fred_18-Q3-R57-64_BATAC.644 tig00000797-10-263570, whole genome shotgun sequence 26,397

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory