fast.genomicscompare 6,575 genera of bacteria & archaea

 

JADKFD01 sp016713135 Fred_18-Q3-R57-64_BATAC.568

Genome identifier: GCA_016713135.1

NCBI assembly name: ASM1671313v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Xanthomonadales, SZUA-5, JADKFD01, JADKFD01 sp016713135

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Xanthomonadales, Rhodanobacteraceae

Scaffolds: 23

Genes: 4,709 Protein-coding: 4,426 RNAs: 60 pseudogenes: 223

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JADJPR010000001.1 MAG: Rhodanobacteraceae bacterium isolate Fred_18-Q3-R57-64_BATAC.568 tig00004767-10-5896050, whole genome shotgun sequence 589,289
JADJPR010000002.1 MAG: Rhodanobacteraceae bacterium isolate Fred_18-Q3-R57-64_BATAC.568 tig00006096-10-4511600, whole genome shotgun sequence 451,692
JADJPR010000003.1 MAG: Rhodanobacteraceae bacterium isolate Fred_18-Q3-R57-64_BATAC.568 tig00007154-10-3491990, whole genome shotgun sequence 349,443
JADJPR010000004.1 MAG: Rhodanobacteraceae bacterium isolate Fred_18-Q3-R57-64_BATAC.568 tig00009057-10-3822730, whole genome shotgun sequence 384,226
JADJPR010000005.1 MAG: Rhodanobacteraceae bacterium isolate Fred_18-Q3-R57-64_BATAC.568 tig00009232-10-931910, whole genome shotgun sequence 93,406
JADJPR010000006.1 MAG: Rhodanobacteraceae bacterium isolate Fred_18-Q3-R57-64_BATAC.568 tig00009783-10-1538110, whole genome shotgun sequence 154,372
JADJPR010000007.1 MAG: Rhodanobacteraceae bacterium isolate Fred_18-Q3-R57-64_BATAC.568 tig00009955-10-3538560, whole genome shotgun sequence 353,525
JADJPR010000008.1 MAG: Rhodanobacteraceae bacterium isolate Fred_18-Q3-R57-64_BATAC.568 tig00010228-10-118720, whole genome shotgun sequence 11,610
JADJPR010000009.1 MAG: Rhodanobacteraceae bacterium isolate Fred_18-Q3-R57-64_BATAC.568 tig00010300-10-156130, whole genome shotgun sequence 15,614
JADJPR010000010.1 MAG: Rhodanobacteraceae bacterium isolate Fred_18-Q3-R57-64_BATAC.568 tig00010594-10-2383770, whole genome shotgun sequence 238,238
JADJPR010000011.1 MAG: Rhodanobacteraceae bacterium isolate Fred_18-Q3-R57-64_BATAC.568 tig00010759-10-155220, whole genome shotgun sequence 15,563
JADJPR010000012.1 MAG: Rhodanobacteraceae bacterium isolate Fred_18-Q3-R57-64_BATAC.568 tig00010838-10-2830240, whole genome shotgun sequence 282,657
JADJPR010000013.1 MAG: Rhodanobacteraceae bacterium isolate Fred_18-Q3-R57-64_BATAC.568 tig00010875-10-297280, whole genome shotgun sequence 29,731
JADJPR010000014.1 MAG: Rhodanobacteraceae bacterium isolate Fred_18-Q3-R57-64_BATAC.568 tig00012532-10-221840, whole genome shotgun sequence 22,221
JADJPR010000015.1 MAG: Rhodanobacteraceae bacterium isolate Fred_18-Q3-R57-64_BATAC.568 tig00014008-10-1124190, whole genome shotgun sequence 111,779
JADJPR010000016.1 MAG: Rhodanobacteraceae bacterium isolate Fred_18-Q3-R57-64_BATAC.568 tig00015992-10-1900370, whole genome shotgun sequence 190,522
JADJPR010000017.1 MAG: Rhodanobacteraceae bacterium isolate Fred_18-Q3-R57-64_BATAC.568 tig00016042-10-1475120, whole genome shotgun sequence 146,919
JADJPR010000018.1 MAG: Rhodanobacteraceae bacterium isolate Fred_18-Q3-R57-64_BATAC.568 tig00019002-10-1323290, whole genome shotgun sequence 132,107
JADJPR010000019.1 MAG: Rhodanobacteraceae bacterium isolate Fred_18-Q3-R57-64_BATAC.568 tig00048822-10-130480, whole genome shotgun sequence 12,765
JADJPR010000020.1 MAG: Rhodanobacteraceae bacterium isolate Fred_18-Q3-R57-64_BATAC.568 tig00352004-10-6748240, whole genome shotgun sequence 675,367
JADJPR010000021.1 MAG: Rhodanobacteraceae bacterium isolate Fred_18-Q3-R57-64_BATAC.568 tig01546786-10-151960, whole genome shotgun sequence 14,950
JADJPR010000022.1 MAG: Rhodanobacteraceae bacterium isolate Fred_18-Q3-R57-64_BATAC.568 tig01546787-10-4550160, whole genome shotgun sequence 452,201
JADJPR010000023.1 MAG: Rhodanobacteraceae bacterium isolate Fred_18-Q3-R57-64_BATAC.568 tig01554749-10-8645870, whole genome shotgun sequence 868,335

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory