fast.genomicscompare 6,575 genera of bacteria & archaea

 

JADJPE01 sp016713425 Fred_18-Q3-R57-64_BATAC.308

Genome identifier: GCA_016713425.1

NCBI assembly name: ASM1671342v1

GTDB taxonomy: Bacteria, Myxococcota, WYAZ01, WYAZ01, WYAZ01, JADJPE01, JADJPE01 sp016713425

NCBI taxonomy: Bacteria, Deltaproteobacteria

Scaffolds: 5

Genes: 5,649 Protein-coding: 5,501 RNAs: 59 pseudogenes: 89

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JADJPE010000001.1 MAG: Deltaproteobacteria bacterium isolate Fred_18-Q3-R57-64_BATAC.308 tig00087549-10-86690, whole genome shotgun sequence 8,690
JADJPE010000002.1 MAG: Deltaproteobacteria bacterium isolate Fred_18-Q3-R57-64_BATAC.308 tig00125750-10-89840, whole genome shotgun sequence 9,023
JADJPE010000003.1 MAG: Deltaproteobacteria bacterium isolate Fred_18-Q3-R57-64_BATAC.308 tig00222593-10-56170, whole genome shotgun sequence 5,633
JADJPE010000004.1 MAG: Deltaproteobacteria bacterium isolate Fred_18-Q3-R57-64_BATAC.308 tig00330537-10-88690, whole genome shotgun sequence 8,929
JADJPE010000005.1 MAG: Deltaproteobacteria bacterium isolate Fred_18-Q3-R57-64_BATAC.308 tig01546525-10-72987380, whole genome shotgun sequence 7,301,376

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory