fast.genomicscompare 6,575 genera of bacteria & archaea

 

UBA7672 sp016714495 OdNW_18-Q3-R42-56_BATAC.488

Genome identifier: GCA_016714495.1

NCBI assembly name: ASM1671449v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Caulobacterales, Hyphomonadaceae, UBA7672, UBA7672 sp016714495

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomonadales, Hyphomonadaceae

Scaffolds: 27

Genes: 4,501 Protein-coding: 4,202 RNAs: 48 pseudogenes: 251

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JADKDU010000001.1 MAG: Hyphomonadaceae bacterium isolate OdNW_18-Q3-R42-56_BATAC.488 tig00000821-10-8993280, whole genome shotgun sequence 898,596
JADKDU010000002.1 MAG: Hyphomonadaceae bacterium isolate OdNW_18-Q3-R42-56_BATAC.488 tig00001255-10-6582370, whole genome shotgun sequence 659,339
JADKDU010000003.1 MAG: Hyphomonadaceae bacterium isolate OdNW_18-Q3-R42-56_BATAC.488 tig00002360-10-3734830, whole genome shotgun sequence 374,465
JADKDU010000004.1 MAG: Hyphomonadaceae bacterium isolate OdNW_18-Q3-R42-56_BATAC.488 tig00003522-10-3455510, whole genome shotgun sequence 345,707
JADKDU010000005.1 MAG: Hyphomonadaceae bacterium isolate OdNW_18-Q3-R42-56_BATAC.488 tig00003531-10-3247300, whole genome shotgun sequence 324,927
JADKDU010000006.1 MAG: Hyphomonadaceae bacterium isolate OdNW_18-Q3-R42-56_BATAC.488 tig00003908-10-2334080, whole genome shotgun sequence 233,548
JADKDU010000007.1 MAG: Hyphomonadaceae bacterium isolate OdNW_18-Q3-R42-56_BATAC.488 tig00006067-10-2611070, whole genome shotgun sequence 260,794
JADKDU010000008.1 MAG: Hyphomonadaceae bacterium isolate OdNW_18-Q3-R42-56_BATAC.488 tig00006827-10-992540, whole genome shotgun sequence 99,457
JADKDU010000009.1 MAG: Hyphomonadaceae bacterium isolate OdNW_18-Q3-R42-56_BATAC.488 tig00007915-10-266850, whole genome shotgun sequence 26,565
JADKDU010000010.1 MAG: Hyphomonadaceae bacterium isolate OdNW_18-Q3-R42-56_BATAC.488 tig00008361-10-1319810, whole genome shotgun sequence 132,284
JADKDU010000011.1 MAG: Hyphomonadaceae bacterium isolate OdNW_18-Q3-R42-56_BATAC.488 tig00009669-10-1252280, whole genome shotgun sequence 124,980
JADKDU010000012.1 MAG: Hyphomonadaceae bacterium isolate OdNW_18-Q3-R42-56_BATAC.488 tig00012234-10-920310, whole genome shotgun sequence 91,732
JADKDU010000013.1 MAG: Hyphomonadaceae bacterium isolate OdNW_18-Q3-R42-56_BATAC.488 tig00012324-10-891480, whole genome shotgun sequence 90,512
JADKDU010000014.1 MAG: Hyphomonadaceae bacterium isolate OdNW_18-Q3-R42-56_BATAC.488 tig00013885-10-750170, whole genome shotgun sequence 74,471
JADKDU010000015.1 MAG: Hyphomonadaceae bacterium isolate OdNW_18-Q3-R42-56_BATAC.488 tig00020280-10-496110, whole genome shotgun sequence 49,676
JADKDU010000016.1 MAG: Hyphomonadaceae bacterium isolate OdNW_18-Q3-R42-56_BATAC.488 tig00021521-10-599500, whole genome shotgun sequence 59,961
JADKDU010000017.1 MAG: Hyphomonadaceae bacterium isolate OdNW_18-Q3-R42-56_BATAC.488 tig00028612-10-320690, whole genome shotgun sequence 31,973
JADKDU010000018.1 MAG: Hyphomonadaceae bacterium isolate OdNW_18-Q3-R42-56_BATAC.488 tig00030802-10-584690, whole genome shotgun sequence 58,297
JADKDU010000019.1 MAG: Hyphomonadaceae bacterium isolate OdNW_18-Q3-R42-56_BATAC.488 tig00035160-10-236660, whole genome shotgun sequence 23,748
JADKDU010000020.1 MAG: Hyphomonadaceae bacterium isolate OdNW_18-Q3-R42-56_BATAC.488 tig00048956-10-416480, whole genome shotgun sequence 41,552
JADKDU010000021.1 MAG: Hyphomonadaceae bacterium isolate OdNW_18-Q3-R42-56_BATAC.488 tig00069665-10-214090, whole genome shotgun sequence 21,158
JADKDU010000022.1 MAG: Hyphomonadaceae bacterium isolate OdNW_18-Q3-R42-56_BATAC.488 tig00109512-10-81510, whole genome shotgun sequence 8,160
JADKDU010000023.1 MAG: Hyphomonadaceae bacterium isolate OdNW_18-Q3-R42-56_BATAC.488 tig00154411-10-108320, whole genome shotgun sequence 10,845
JADKDU010000024.1 MAG: Hyphomonadaceae bacterium isolate OdNW_18-Q3-R42-56_BATAC.488 tig00184274-10-71770, whole genome shotgun sequence 7,212
JADKDU010000025.1 MAG: Hyphomonadaceae bacterium isolate OdNW_18-Q3-R42-56_BATAC.488 tig00221056-10-338120, whole genome shotgun sequence 33,865
JADKDU010000026.1 MAG: Hyphomonadaceae bacterium isolate OdNW_18-Q3-R42-56_BATAC.488 tig00221057-10-315860, whole genome shotgun sequence 31,667
JADKDU010000027.1 MAG: Hyphomonadaceae bacterium isolate OdNW_18-Q3-R42-56_BATAC.488 tig00896869-10-3130470, whole genome shotgun sequence 313,042

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory