fast.genomicscompare 6,575 genera of bacteria & archaea

 

GCA-013693735 sp016716745 Hjor_18-Q3-R7-51_BAT3C.155

Genome identifier: GCA_016716745.1

NCBI assembly name: ASM1671674v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Beijerinckiaceae, GCA-013693735, GCA-013693735 sp016716745

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales

Scaffolds: 16

Genes: 3,477 Protein-coding: 3,158 RNAs: 54 pseudogenes: 265

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JADJVD010000001.1 MAG: Hyphomicrobiales bacterium isolate Hjor_18-Q3-R7-51_BAT3C.155 tig00002302-10-7271530, whole genome shotgun sequence 727,809
JADJVD010000002.1 MAG: Hyphomicrobiales bacterium isolate Hjor_18-Q3-R7-51_BAT3C.155 tig00002714-10-1977560, whole genome shotgun sequence 198,032
JADJVD010000003.1 MAG: Hyphomicrobiales bacterium isolate Hjor_18-Q3-R7-51_BAT3C.155 tig00002714-1981250-5975520, whole genome shotgun sequence 399,898
JADJVD010000004.1 MAG: Hyphomicrobiales bacterium isolate Hjor_18-Q3-R7-51_BAT3C.155 tig00002757-10-5471790, whole genome shotgun sequence 547,955
JADJVD010000005.1 MAG: Hyphomicrobiales bacterium isolate Hjor_18-Q3-R7-51_BAT3C.155 tig00003047-10-4707070, whole genome shotgun sequence 471,152
JADJVD010000006.1 MAG: Hyphomicrobiales bacterium isolate Hjor_18-Q3-R7-51_BAT3C.155 tig00003356-10-3515290, whole genome shotgun sequence 352,074
JADJVD010000007.1 MAG: Hyphomicrobiales bacterium isolate Hjor_18-Q3-R7-51_BAT3C.155 tig00004306-10-2623260, whole genome shotgun sequence 262,253
JADJVD010000008.1 MAG: Hyphomicrobiales bacterium isolate Hjor_18-Q3-R7-51_BAT3C.155 tig00005715-10-1653320, whole genome shotgun sequence 165,444
JADJVD010000009.1 MAG: Hyphomicrobiales bacterium isolate Hjor_18-Q3-R7-51_BAT3C.155 tig00006732-10-1232420, whole genome shotgun sequence 123,476
JADJVD010000010.1 MAG: Hyphomicrobiales bacterium isolate Hjor_18-Q3-R7-51_BAT3C.155 tig00008155-10-1003130, whole genome shotgun sequence 100,465
JADJVD010000011.1 MAG: Hyphomicrobiales bacterium isolate Hjor_18-Q3-R7-51_BAT3C.155 tig00011654-10-645590, whole genome shotgun sequence 64,510
JADJVD010000012.1 MAG: Hyphomicrobiales bacterium isolate Hjor_18-Q3-R7-51_BAT3C.155 tig00015867-10-423380, whole genome shotgun sequence 42,393
JADJVD010000013.1 MAG: Hyphomicrobiales bacterium isolate Hjor_18-Q3-R7-51_BAT3C.155 tig00033358-10-100820, whole genome shotgun sequence 9,877
JADJVD010000014.1 MAG: Hyphomicrobiales bacterium isolate Hjor_18-Q3-R7-51_BAT3C.155 tig00037117-10-65740, whole genome shotgun sequence 6,540
JADJVD010000015.1 MAG: Hyphomicrobiales bacterium isolate Hjor_18-Q3-R7-51_BAT3C.155 tig00525785-10-1821360, whole genome shotgun sequence 181,535
JADJVD010000016.1 MAG: Hyphomicrobiales bacterium isolate Hjor_18-Q3-R7-51_BAT3C.155 tig00525786-10-173920, whole genome shotgun sequence 17,397

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory