fast.genomicscompare 6,575 genera of bacteria & archaea

 

PNOJ01 sp016719645 Lyne_18-Q3-R50-59_BATAC.526

Genome identifier: GCA_016719645.1

NCBI assembly name: ASM1671964v1

GTDB taxonomy: Bacteria, Krumholzibacteriota, Krumholzibacteria, LZORAL124-64-63, LZORAL124-64-63, PNOJ01, PNOJ01 sp016719645

NCBI taxonomy: Bacteria

Scaffolds: 38

Genes: 3,387 Protein-coding: 3,183 RNAs: 55 pseudogenes: 149

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JADJYS010000001.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00003239-10-6545020, whole genome shotgun sequence 655,273
JADJYS010000002.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00003255-10-6223550, whole genome shotgun sequence 622,259
JADJYS010000003.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00003286-10-175790, whole genome shotgun sequence 17,289
JADJYS010000004.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00007725-10-2904590, whole genome shotgun sequence 289,565
JADJYS010000005.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00010496-10-260110, whole genome shotgun sequence 26,034
JADJYS010000006.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00011164-10-2610070, whole genome shotgun sequence 261,460
JADJYS010000007.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00012034-10-149600, whole genome shotgun sequence 14,896
JADJYS010000008.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00013262-10-263300, whole genome shotgun sequence 26,385
JADJYS010000009.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00014041-10-1768200, whole genome shotgun sequence 176,910
JADJYS010000010.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00015048-10-1822050, whole genome shotgun sequence 184,234
JADJYS010000011.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00017870-10-410160, whole genome shotgun sequence 41,001
JADJYS010000012.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00018850-10-1223050, whole genome shotgun sequence 122,497
JADJYS010000013.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00019469-10-650950, whole genome shotgun sequence 62,876
JADJYS010000014.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00020059-10-1434330, whole genome shotgun sequence 144,327
JADJYS010000015.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00020111-10-202350, whole genome shotgun sequence 20,034
JADJYS010000016.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00022793-10-763170, whole genome shotgun sequence 75,394
JADJYS010000017.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00024621-10-177890, whole genome shotgun sequence 17,800
JADJYS010000018.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00024803-10-506090, whole genome shotgun sequence 50,715
JADJYS010000019.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00025309-10-200510, whole genome shotgun sequence 20,049
JADJYS010000020.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00026700-10-377750, whole genome shotgun sequence 37,712
JADJYS010000021.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00029239-10-389440, whole genome shotgun sequence 39,026
JADJYS010000022.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00029475-10-500550, whole genome shotgun sequence 50,186
JADJYS010000023.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00044906-10-180020, whole genome shotgun sequence 18,069
JADJYS010000024.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00058866-10-147400, whole genome shotgun sequence 14,414
JADJYS010000025.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00090980-10-173150, whole genome shotgun sequence 17,175
JADJYS010000026.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00106999-10-57900, whole genome shotgun sequence 5,903
JADJYS010000027.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00117188-10-185150, whole genome shotgun sequence 18,543
JADJYS010000028.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00322479-10-1875480, whole genome shotgun sequence 187,418
JADJYS010000029.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00322480-10-294940, whole genome shotgun sequence 29,542
JADJYS010000030.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00322481-10-377970, whole genome shotgun sequence 37,829
JADJYS010000031.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00322482-10-372860, whole genome shotgun sequence 37,177
JADJYS010000032.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00322483-10-204420, whole genome shotgun sequence 20,363
JADJYS010000033.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00322705-10-1603570, whole genome shotgun sequence 160,645
JADJYS010000034.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00322706-10-329100, whole genome shotgun sequence 32,697
JADJYS010000035.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig00323994-10-820670, whole genome shotgun sequence 81,925
JADJYS010000036.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig01430717-10-1102700, whole genome shotgun sequence 110,500
JADJYS010000037.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig01430839-10-1613640, whole genome shotgun sequence 162,025
JADJYS010000038.1 MAG: bacterium isolate Lyne_18-Q3-R50-59_BATAC.526 tig01434850-10-323940, whole genome shotgun sequence 32,332

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory