fast.genomicscompare 6,575 genera of bacteria & archaea

 

JADJYF01 sp016719885 Lyne_18-Q3-R50-59_BAT3C.630

Genome identifier: GCA_016719885.1

NCBI assembly name: ASM1671988v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Ga0077536, Ga0077536, JADJYF01, JADJYF01 sp016719885

NCBI taxonomy: Bacteria, Pseudomonadota

Scaffolds: 30

Genes: 4,883 Protein-coding: 4,653 RNAs: 53 pseudogenes: 177

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JADJYF010000001.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig00002049-10-5507680, whole genome shotgun sequence 549,819
JADJYF010000002.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig00002802-10-1282250, whole genome shotgun sequence 128,588
JADJYF010000003.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig00003386-10-1498950, whole genome shotgun sequence 149,856
JADJYF010000004.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig00006062-10-4099790, whole genome shotgun sequence 409,980
JADJYF010000005.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig00006413-10-4313760, whole genome shotgun sequence 430,588
JADJYF010000006.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig00007515-10-3583810, whole genome shotgun sequence 354,816
JADJYF010000007.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig00007858-10-246220, whole genome shotgun sequence 24,496
JADJYF010000008.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig00008186-10-3400060, whole genome shotgun sequence 340,203
JADJYF010000009.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig00008362-10-142460, whole genome shotgun sequence 13,994
JADJYF010000010.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig00009198-10-3223420, whole genome shotgun sequence 323,763
JADJYF010000011.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig00010067-10-1980940, whole genome shotgun sequence 197,607
JADJYF010000012.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig00011870-10-2387850, whole genome shotgun sequence 236,608
JADJYF010000013.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig00013515-10-1707420, whole genome shotgun sequence 170,637
JADJYF010000014.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig00014359-10-2014510, whole genome shotgun sequence 202,110
JADJYF010000015.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig00016079-10-1654720, whole genome shotgun sequence 165,108
JADJYF010000016.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig00016800-10-1418630, whole genome shotgun sequence 141,806
JADJYF010000017.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig00016823-10-1012010, whole genome shotgun sequence 101,141
JADJYF010000018.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig00017291-10-1668700, whole genome shotgun sequence 167,032
JADJYF010000019.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig00020242-10-1572360, whole genome shotgun sequence 157,296
JADJYF010000020.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig00020734-10-1261230, whole genome shotgun sequence 126,230
JADJYF010000021.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig00030507-10-713900, whole genome shotgun sequence 71,423
JADJYF010000022.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig00030618-10-675860, whole genome shotgun sequence 67,587
JADJYF010000023.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig00039299-10-260710, whole genome shotgun sequence 25,315
JADJYF010000024.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig00058473-10-118290, whole genome shotgun sequence 11,511
JADJYF010000025.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig00110220-10-107100, whole genome shotgun sequence 10,753
JADJYF010000026.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig00321557-10-6251920, whole genome shotgun sequence 625,187
JADJYF010000027.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig00323059-10-1485170, whole genome shotgun sequence 148,801
JADJYF010000028.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig01430470-10-164950, whole genome shotgun sequence 16,220
JADJYF010000029.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig01432318-10-343300, whole genome shotgun sequence 34,508
JADJYF010000030.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.630 tig01432319-10-132590, whole genome shotgun sequence 13,111

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory