fast.genomicscompare 6,575 genera of bacteria & archaea

 

ZC4RG30 sp016720075 Lyne_18-Q3-R50-59_BAT3C.242

Genome identifier: GCA_016720075.1

NCBI assembly name: ASM1672007v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Steroidobacterales, Steroidobacteraceae, ZC4RG30, ZC4RG30 sp016720075

NCBI taxonomy: Bacteria, Pseudomonadota

Scaffolds: 23

Genes: 3,804 Protein-coding: 3,512 RNAs: 55 pseudogenes: 237

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JADJXW010000001.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.242 tig00003830-10-7287210, whole genome shotgun sequence 728,205
JADJXW010000002.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.242 tig00008944-10-3230090, whole genome shotgun sequence 323,228
JADJXW010000003.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.242 tig00010213-10-2848560, whole genome shotgun sequence 285,044
JADJXW010000004.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.242 tig00011179-10-2748300, whole genome shotgun sequence 276,535
JADJXW010000005.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.242 tig00011248-10-2959290, whole genome shotgun sequence 295,908
JADJXW010000006.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.242 tig00011253-10-2562610, whole genome shotgun sequence 256,526
JADJXW010000007.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.242 tig00013409-10-153580, whole genome shotgun sequence 15,210
JADJXW010000008.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.242 tig00016160-10-1035880, whole genome shotgun sequence 103,733
JADJXW010000009.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.242 tig00017252-10-1552410, whole genome shotgun sequence 157,098
JADJXW010000010.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.242 tig00021909-10-1182700, whole genome shotgun sequence 117,740
JADJXW010000011.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.242 tig00023701-10-939170, whole genome shotgun sequence 93,779
JADJXW010000012.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.242 tig00024229-10-235410, whole genome shotgun sequence 23,572
JADJXW010000013.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.242 tig00030984-10-403410, whole genome shotgun sequence 40,392
JADJXW010000014.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.242 tig00045652-10-430290, whole genome shotgun sequence 42,828
JADJXW010000015.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.242 tig00047989-10-459400, whole genome shotgun sequence 45,901
JADJXW010000016.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.242 tig00051068-10-250190, whole genome shotgun sequence 25,081
JADJXW010000017.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.242 tig00059202-10-336410, whole genome shotgun sequence 33,739
JADJXW010000018.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.242 tig00062664-10-341670, whole genome shotgun sequence 33,831
JADJXW010000019.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.242 tig00249231-10-50290, whole genome shotgun sequence 4,739
JADJXW010000020.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.242 tig01430402-10-4464960, whole genome shotgun sequence 446,009
JADJXW010000021.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.242 tig01430417-10-4646990, whole genome shotgun sequence 465,555
JADJXW010000022.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.242 tig01430999-10-570350, whole genome shotgun sequence 56,074
JADJXW010000023.1 MAG: Proteobacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.242 tig01438251-10-28490, whole genome shotgun sequence 2,855

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory