fast.genomicscompare 6,575 genera of bacteria & archaea

 

JADJXV01 sp016720145 Lyne_18-Q3-R50-59_BAT3C.229

Genome identifier: GCA_016720145.1

NCBI assembly name: ASM1672014v1

GTDB taxonomy: Bacteria, Bacteroidota, Kapaibacteriia, Kapaibacteriales, UBA961, JADJXV01, JADJXV01 sp016720145

NCBI taxonomy: Bacteria, Ignavibacteriota, Ignavibacteria

Scaffolds: 30

Genes: 4,012 Protein-coding: 3,815 RNAs: 59 pseudogenes: 138

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JADJXV010000001.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig00005599-10-5395750, whole genome shotgun sequence 539,254
JADJXV010000002.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig00006384-10-4292810, whole genome shotgun sequence 429,628
JADJXV010000003.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig00006466-10-5051340, whole genome shotgun sequence 505,463
JADJXV010000004.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig00007399-10-3948260, whole genome shotgun sequence 392,781
JADJXV010000005.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig00007795-10-216600, whole genome shotgun sequence 21,754
JADJXV010000006.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig00008994-10-2739530, whole genome shotgun sequence 274,727
JADJXV010000007.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig00010222-10-2789860, whole genome shotgun sequence 279,923
JADJXV010000008.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig00014666-10-1875800, whole genome shotgun sequence 188,064
JADJXV010000009.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig00016893-10-1026610, whole genome shotgun sequence 102,712
JADJXV010000010.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig00016981-10-1889860, whole genome shotgun sequence 188,976
JADJXV010000011.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig00017408-10-256670, whole genome shotgun sequence 25,507
JADJXV010000012.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig00017436-10-1474830, whole genome shotgun sequence 146,197
JADJXV010000013.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig00018949-10-1167980, whole genome shotgun sequence 117,253
JADJXV010000014.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig00019054-10-1107030, whole genome shotgun sequence 110,559
JADJXV010000015.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig00020346-10-1002700, whole genome shotgun sequence 100,572
JADJXV010000016.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig00022166-10-1106050, whole genome shotgun sequence 110,540
JADJXV010000017.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig00023051-10-942720, whole genome shotgun sequence 94,606
JADJXV010000018.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig00042907-10-481950, whole genome shotgun sequence 48,214
JADJXV010000019.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig00053516-10-577670, whole genome shotgun sequence 57,876
JADJXV010000020.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig00059990-10-312940, whole genome shotgun sequence 31,288
JADJXV010000021.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig00060051-10-163710, whole genome shotgun sequence 16,434
JADJXV010000022.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig00064107-10-193050, whole genome shotgun sequence 19,315
JADJXV010000023.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig00098798-10-167650, whole genome shotgun sequence 16,816
JADJXV010000024.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig00321951-10-3399310, whole genome shotgun sequence 341,348
JADJXV010000025.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig00321952-10-967670, whole genome shotgun sequence 97,019
JADJXV010000026.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig00323207-10-1388230, whole genome shotgun sequence 139,032
JADJXV010000027.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig00323209-10-609390, whole genome shotgun sequence 61,008
JADJXV010000028.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig01430477-10-3906270, whole genome shotgun sequence 391,654
JADJXV010000029.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig01430478-10-111160, whole genome shotgun sequence 11,158
JADJXV010000030.1 MAG: Ignavibacteria bacterium isolate Lyne_18-Q3-R50-59_BAT3C.229 tig01434805-10-47970, whole genome shotgun sequence 4,868

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory