fast.genomicscompare 6,575 genera of bacteria & archaea

 

CAIPTY01 sp016720395 Viby_18-Q3-R106-67_BAT3C.94

Genome identifier: GCA_016720395.1

NCBI assembly name: ASM1672039v1

GTDB taxonomy: Bacteria, Desulfobacterota, Desulfuromonadia, Geobacterales, Pseudopelobacteraceae, CAIPTY01, CAIPTY01 sp016720395

NCBI taxonomy: Bacteria, Thermodesulfobacteriota, Desulfuromonadia, Geobacterales, Geobacteraceae

Scaffolds: 17

Genes: 3,075 Protein-coding: 2,893 RNAs: 60 pseudogenes: 122

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JADKKR010000001.1 MAG: Geobacteraceae bacterium isolate Viby_18-Q3-R106-67_BAT3C.94 tig00000089-10-3741890, whole genome shotgun sequence 374,608
JADKKR010000002.1 MAG: Geobacteraceae bacterium isolate Viby_18-Q3-R106-67_BAT3C.94 tig00000089-3745210-8274930, whole genome shotgun sequence 455,485
JADKKR010000003.1 MAG: Geobacteraceae bacterium isolate Viby_18-Q3-R106-67_BAT3C.94 tig00000284-10-3987410, whole genome shotgun sequence 398,162
JADKKR010000004.1 MAG: Geobacteraceae bacterium isolate Viby_18-Q3-R106-67_BAT3C.94 tig00000338-10-2958450, whole genome shotgun sequence 296,437
JADKKR010000005.1 MAG: Geobacteraceae bacterium isolate Viby_18-Q3-R106-67_BAT3C.94 tig00000356-10-4287650, whole genome shotgun sequence 429,374
JADKKR010000006.1 MAG: Geobacteraceae bacterium isolate Viby_18-Q3-R106-67_BAT3C.94 tig00000403-10-244780, whole genome shotgun sequence 24,561
JADKKR010000007.1 MAG: Geobacteraceae bacterium isolate Viby_18-Q3-R106-67_BAT3C.94 tig00000403-276510-2185030, whole genome shotgun sequence 191,079
JADKKR010000008.1 MAG: Geobacteraceae bacterium isolate Viby_18-Q3-R106-67_BAT3C.94 tig00000457-10-4307830, whole genome shotgun sequence 431,204
JADKKR010000009.1 MAG: Geobacteraceae bacterium isolate Viby_18-Q3-R106-67_BAT3C.94 tig00000571-10-2913770, whole genome shotgun sequence 291,939
JADKKR010000010.1 MAG: Geobacteraceae bacterium isolate Viby_18-Q3-R106-67_BAT3C.94 tig00001323-10-219820, whole genome shotgun sequence 22,009
JADKKR010000011.1 MAG: Geobacteraceae bacterium isolate Viby_18-Q3-R106-67_BAT3C.94 tig00001347-10-562780, whole genome shotgun sequence 56,377
JADKKR010000012.1 MAG: Geobacteraceae bacterium isolate Viby_18-Q3-R106-67_BAT3C.94 tig00002461-10-601220, whole genome shotgun sequence 60,146
JADKKR010000013.1 MAG: Geobacteraceae bacterium isolate Viby_18-Q3-R106-67_BAT3C.94 tig00003059-10-1136410, whole genome shotgun sequence 113,811
JADKKR010000014.1 MAG: Geobacteraceae bacterium isolate Viby_18-Q3-R106-67_BAT3C.94 tig00004389-10-498720, whole genome shotgun sequence 49,405
JADKKR010000015.1 MAG: Geobacteraceae bacterium isolate Viby_18-Q3-R106-67_BAT3C.94 tig00004697-10-378840, whole genome shotgun sequence 37,945
JADKKR010000016.1 MAG: Geobacteraceae bacterium isolate Viby_18-Q3-R106-67_BAT3C.94 tig00007122-10-228190, whole genome shotgun sequence 22,849
JADKKR010000017.1 MAG: Geobacteraceae bacterium isolate Viby_18-Q3-R106-67_BAT3C.94 tig00016004-10-304210, whole genome shotgun sequence 30,499

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory