fast.genomicscompare 6,575 genera of bacteria & archaea

 

JADKJE01 sp016722515 Skiv_18-Q3-R9-52_MAXAC.332

Genome identifier: GCA_016722515.1

NCBI assembly name: ASM1672251v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rickettsiales, JADKJE01, JADKJE01, JADKJE01 sp016722515

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria

Scaffolds: 31

Genes: 3,189 Protein-coding: 3,084 RNAs: 43 pseudogenes: 62

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JADKJE010000001.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00001358-10-10353760, whole genome shotgun sequence 1,038,801
JADKJE010000002.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00002106-10-8558360, whole genome shotgun sequence 858,723
JADKJE010000003.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00004840-10-4399390, whole genome shotgun sequence 441,507
JADKJE010000004.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00011135-10-1990170, whole genome shotgun sequence 199,972
JADKJE010000005.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00013467-10-1452560, whole genome shotgun sequence 145,574
JADKJE010000006.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00015421-10-1345840, whole genome shotgun sequence 134,495
JADKJE010000007.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00015715-10-598480, whole genome shotgun sequence 60,062
JADKJE010000008.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00018570-10-429350, whole genome shotgun sequence 43,141
JADKJE010000009.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00026734-10-664270, whole genome shotgun sequence 66,688
JADKJE010000010.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00032753-10-435740, whole genome shotgun sequence 43,657
JADKJE010000011.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00039424-10-369070, whole genome shotgun sequence 37,062
JADKJE010000012.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00041360-10-406750, whole genome shotgun sequence 40,940
JADKJE010000013.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00045193-10-315730, whole genome shotgun sequence 31,754
JADKJE010000014.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00053673-10-110060, whole genome shotgun sequence 11,110
JADKJE010000015.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00061800-10-98320, whole genome shotgun sequence 9,888
JADKJE010000016.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00076188-10-70450, whole genome shotgun sequence 7,146
JADKJE010000017.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00082842-10-84790, whole genome shotgun sequence 8,522
JADKJE010000018.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00083766-10-94990, whole genome shotgun sequence 9,556
JADKJE010000019.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00124780-10-48200, whole genome shotgun sequence 4,860
JADKJE010000020.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00136860-10-40740, whole genome shotgun sequence 4,111
JADKJE010000021.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00138407-10-48870, whole genome shotgun sequence 4,891
JADKJE010000022.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00151518-10-47530, whole genome shotgun sequence 4,808
JADKJE010000023.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00152312-10-43540, whole genome shotgun sequence 4,389
JADKJE010000024.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00159541-10-87540, whole genome shotgun sequence 8,825
JADKJE010000025.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00167994-10-46330, whole genome shotgun sequence 4,693
JADKJE010000026.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00210630-10-40640, whole genome shotgun sequence 4,092
JADKJE010000027.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00238119-10-42790, whole genome shotgun sequence 4,235
JADKJE010000028.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00254330-10-103130, whole genome shotgun sequence 10,342
JADKJE010000029.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig00279858-10-66410, whole genome shotgun sequence 6,693
JADKJE010000030.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig01152463-10-221530, whole genome shotgun sequence 21,870
JADKJE010000031.1 MAG: Alphaproteobacteria bacterium isolate Skiv_18-Q3-R9-52_MAXAC.332 tig01152464-10-223970, whole genome shotgun sequence 22,083

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory