fast.genomicscompare 6,575 genera of bacteria & archaea

 

JAEUKQ01 sp016722635 Skiv_18-Q3-R9-52_MAXAC.177

Genome identifier: GCA_016722635.1

NCBI assembly name: ASM1672263v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, JAEUKQ01, JAEUKQ01, JAEUKQ01, JAEUKQ01 sp016722635

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodospirillales, Rhodospirillaceae

Scaffolds: 14

Genes: 1,977 Protein-coding: 1,827 RNAs: 67 pseudogenes: 83

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JADKIX010000001.1 MAG: Rhodospirillaceae bacterium isolate Skiv_18-Q3-R9-52_MAXAC.177 tig00000303-10-187690, whole genome shotgun sequence 18,415
JADKIX010000002.1 MAG: Rhodospirillaceae bacterium isolate Skiv_18-Q3-R9-52_MAXAC.177 tig00000352-10-199870, whole genome shotgun sequence 19,840
JADKIX010000003.1 MAG: Rhodospirillaceae bacterium isolate Skiv_18-Q3-R9-52_MAXAC.177 tig00000601-10-5563600, whole genome shotgun sequence 557,450
JADKIX010000004.1 MAG: Rhodospirillaceae bacterium isolate Skiv_18-Q3-R9-52_MAXAC.177 tig00002084-10-213930, whole genome shotgun sequence 21,455
JADKIX010000005.1 MAG: Rhodospirillaceae bacterium isolate Skiv_18-Q3-R9-52_MAXAC.177 tig00014515-10-969420, whole genome shotgun sequence 99,707
JADKIX010000006.1 MAG: Rhodospirillaceae bacterium isolate Skiv_18-Q3-R9-52_MAXAC.177 tig00175200-10-81680, whole genome shotgun sequence 8,043
JADKIX010000007.1 MAG: Rhodospirillaceae bacterium isolate Skiv_18-Q3-R9-52_MAXAC.177 tig00258812-10-37740, whole genome shotgun sequence 3,995
JADKIX010000008.1 MAG: Rhodospirillaceae bacterium isolate Skiv_18-Q3-R9-52_MAXAC.177 tig00287079-10-323200, whole genome shotgun sequence 31,788
JADKIX010000009.1 MAG: Rhodospirillaceae bacterium isolate Skiv_18-Q3-R9-52_MAXAC.177 tig00287080-10-313850, whole genome shotgun sequence 31,381
JADKIX010000010.1 MAG: Rhodospirillaceae bacterium isolate Skiv_18-Q3-R9-52_MAXAC.177 tig00287081-10-5970390, whole genome shotgun sequence 597,552
JADKIX010000011.1 MAG: Rhodospirillaceae bacterium isolate Skiv_18-Q3-R9-52_MAXAC.177 tig01148590-10-4463780, whole genome shotgun sequence 447,538
JADKIX010000012.1 MAG: Rhodospirillaceae bacterium isolate Skiv_18-Q3-R9-52_MAXAC.177 tig01149178-10-210490, whole genome shotgun sequence 20,759
JADKIX010000013.1 MAG: Rhodospirillaceae bacterium isolate Skiv_18-Q3-R9-52_MAXAC.177 tig01150806-10-261090, whole genome shotgun sequence 26,145
JADKIX010000014.1 MAG: Rhodospirillaceae bacterium isolate Skiv_18-Q3-R9-52_MAXAC.177 tig01154997-10-53470, whole genome shotgun sequence 5,402

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory