fast.genomicscompare 6,575 genera of bacteria & archaea

 

JAPWJZ01 sp016794125 new MAG-102

Genome identifier: GCA_016794125.1

NCBI assembly name: ASM1679412v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Micavibrionales, UBA2020, JAPWJZ01, JAPWJZ01 sp016794125

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria

Scaffolds: 4

Genes: 3,152 Protein-coding: 3,097 RNAs: 48 pseudogenes: 7

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAEUKT010000001.1 MAG: Alphaproteobacteria bacterium isolate new MAG-102 k141_3065688, whole genome shotgun sequence 418,516
JAEUKT010000002.1 MAG: Alphaproteobacteria bacterium isolate new MAG-102 k141_1232908, whole genome shotgun sequence 1,634,205
JAEUKT010000003.1 MAG: Alphaproteobacteria bacterium isolate new MAG-102 k141_3228320, whole genome shotgun sequence 356,155
JAEUKT010000004.1 MAG: Alphaproteobacteria bacterium isolate new MAG-102 k141_4496750, whole genome shotgun sequence 749,598

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory