fast.genomicscompare 6,575 genera of bacteria & archaea

 

VGFA01 sp016869025 K_DeepCast_1200m_m2_191

Genome identifier: GCA_016869025.1

NCBI assembly name: JGI 2017-08-21

GTDB taxonomy: Bacteria, CSP1-3, CSP1-3, CSP1-3, CSP1-3, VGFA01, VGFA01 sp016869025

NCBI taxonomy: Bacteria, Armatimonadota

Scaffolds: 48

Genes: 2,546 Protein-coding: 2,469 RNAs: 53 pseudogenes: 24

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
VGFA01000001.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10000012, whole genome shotgun sequence 262,810
VGFA01000002.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10000013, whole genome shotgun sequence 255,391
VGFA01000003.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10000014, whole genome shotgun sequence 248,611
VGFA01000004.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10000031, whole genome shotgun sequence 179,220
VGFA01000005.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10000083, whole genome shotgun sequence 108,681
VGFA01000006.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10000111, whole genome shotgun sequence 96,843
VGFA01000007.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10000113, whole genome shotgun sequence 96,040
VGFA01000008.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10000131, whole genome shotgun sequence 90,116
VGFA01000009.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10000139, whole genome shotgun sequence 88,734
VGFA01000010.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10000202, whole genome shotgun sequence 74,257
VGFA01000011.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10000243, whole genome shotgun sequence 67,829
VGFA01000012.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10000244, whole genome shotgun sequence 67,729
VGFA01000013.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10000260, whole genome shotgun sequence 65,561
VGFA01000014.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10000292, whole genome shotgun sequence 62,784
VGFA01000015.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10000310, whole genome shotgun sequence 61,220
VGFA01000016.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10000365, whole genome shotgun sequence 57,327
VGFA01000017.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10000389, whole genome shotgun sequence 55,385
VGFA01000018.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10000406, whole genome shotgun sequence 54,697
VGFA01000019.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10000453, whole genome shotgun sequence 52,557
VGFA01000020.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10000481, whole genome shotgun sequence 51,424
VGFA01000021.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10000519, whole genome shotgun sequence 49,727
VGFA01000022.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10000549, whole genome shotgun sequence 48,206
VGFA01000023.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10000722, whole genome shotgun sequence 42,869
VGFA01000024.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10000762, whole genome shotgun sequence 41,894
VGFA01000025.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10000908, whole genome shotgun sequence 38,296
VGFA01000026.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10001037, whole genome shotgun sequence 35,961
VGFA01000027.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10003728, whole genome shotgun sequence 18,761
VGFA01000028.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10004149, whole genome shotgun sequence 17,645
VGFA01000029.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10004311, whole genome shotgun sequence 17,254
VGFA01000030.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10005374, whole genome shotgun sequence 15,217
VGFA01000031.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10005703, whole genome shotgun sequence 14,710
VGFA01000032.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10005985, whole genome shotgun sequence 14,337
VGFA01000033.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10006137, whole genome shotgun sequence 14,137
VGFA01000034.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10016036, whole genome shotgun sequence 7,892
VGFA01000035.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10018556, whole genome shotgun sequence 7,204
VGFA01000036.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10020119, whole genome shotgun sequence 6,832
VGFA01000037.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10023406, whole genome shotgun sequence 6,203
VGFA01000038.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10024336, whole genome shotgun sequence 6,052
VGFA01000039.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10026104, whole genome shotgun sequence 5,789
VGFA01000040.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10038683, whole genome shotgun sequence 4,482
VGFA01000041.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10039734, whole genome shotgun sequence 4,404
VGFA01000042.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10040101, whole genome shotgun sequence 4,377
VGFA01000043.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10044310, whole genome shotgun sequence 4,100
VGFA01000044.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10064874, whole genome shotgun sequence 3,191
VGFA01000045.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10080189, whole genome shotgun sequence 2,776
VGFA01000046.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10128023, whole genome shotgun sequence 2,038
VGFA01000047.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10128698, whole genome shotgun sequence 2,031
VGFA01000048.1 MAG: Armatimonadetes bacterium isolate K_DeepCast_1200m_m2_191 K_DeepCast_1200m_m2_191_Ga0194110_10149402, whole genome shotgun sequence 1,838

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory