fast.genomicscompare 6,575 genera of bacteria & archaea

 

VGRF01 sp016875395 K_Offshore_120m_mx_162

Genome identifier: GCA_016875395.1

NCBI assembly name: JGI 2017-08-21

GTDB taxonomy: Bacteria, Myxococcota_A, UBA9160, UBA9160, UBA6930, VGRF01, VGRF01 sp016875395

NCBI taxonomy: Bacteria, Deltaproteobacteria

Scaffolds: 96

Genes: 4,464 Protein-coding: 4,361 RNAs: 55 pseudogenes: 48

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
VGRF01000001.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000002, whole genome shotgun sequence 344,987
VGRF01000002.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000003, whole genome shotgun sequence 341,771
VGRF01000003.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000018, whole genome shotgun sequence 231,019
VGRF01000004.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000020, whole genome shotgun sequence 227,288
VGRF01000005.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000030, whole genome shotgun sequence 195,369
VGRF01000006.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000043, whole genome shotgun sequence 163,750
VGRF01000007.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000044, whole genome shotgun sequence 163,270
VGRF01000008.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000059, whole genome shotgun sequence 149,567
VGRF01000009.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000060, whole genome shotgun sequence 149,236
VGRF01000010.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000084, whole genome shotgun sequence 132,289
VGRF01000011.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000103, whole genome shotgun sequence 124,414
VGRF01000012.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000110, whole genome shotgun sequence 120,906
VGRF01000013.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000124, whole genome shotgun sequence 116,603
VGRF01000014.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000143, whole genome shotgun sequence 111,654
VGRF01000015.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000147, whole genome shotgun sequence 110,667
VGRF01000016.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000195, whole genome shotgun sequence 97,459
VGRF01000017.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000205, whole genome shotgun sequence 95,797
VGRF01000018.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000230, whole genome shotgun sequence 89,017
VGRF01000019.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000255, whole genome shotgun sequence 85,954
VGRF01000020.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000325, whole genome shotgun sequence 78,803
VGRF01000021.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000328, whole genome shotgun sequence 78,672
VGRF01000022.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000371, whole genome shotgun sequence 75,092
VGRF01000023.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000416, whole genome shotgun sequence 71,627
VGRF01000024.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000420, whole genome shotgun sequence 71,320
VGRF01000025.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000476, whole genome shotgun sequence 67,653
VGRF01000026.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000500, whole genome shotgun sequence 66,149
VGRF01000027.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000552, whole genome shotgun sequence 63,494
VGRF01000028.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000621, whole genome shotgun sequence 59,973
VGRF01000029.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000632, whole genome shotgun sequence 59,546
VGRF01000030.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000847, whole genome shotgun sequence 53,046
VGRF01000031.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000912, whole genome shotgun sequence 51,254
VGRF01000032.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10000920, whole genome shotgun sequence 51,168
VGRF01000033.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10001272, whole genome shotgun sequence 43,329
VGRF01000034.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10001332, whole genome shotgun sequence 42,406
VGRF01000035.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10001423, whole genome shotgun sequence 40,934
VGRF01000036.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10001882, whole genome shotgun sequence 35,184
VGRF01000037.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10002248, whole genome shotgun sequence 31,942
VGRF01000038.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10002267, whole genome shotgun sequence 31,822
VGRF01000039.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10002432, whole genome shotgun sequence 30,548
VGRF01000040.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10002530, whole genome shotgun sequence 29,893
VGRF01000041.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10004394, whole genome shotgun sequence 21,308
VGRF01000042.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10004792, whole genome shotgun sequence 20,057
VGRF01000043.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10004955, whole genome shotgun sequence 19,589
VGRF01000044.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10004992, whole genome shotgun sequence 19,509
VGRF01000045.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10005534, whole genome shotgun sequence 18,122
VGRF01000046.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10005909, whole genome shotgun sequence 17,306
VGRF01000047.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10006239, whole genome shotgun sequence 16,699
VGRF01000048.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10007138, whole genome shotgun sequence 15,141
VGRF01000049.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10008283, whole genome shotgun sequence 13,605
VGRF01000050.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10009463, whole genome shotgun sequence 12,304
VGRF01000051.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10009913, whole genome shotgun sequence 11,862
VGRF01000052.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10011773, whole genome shotgun sequence 10,344
VGRF01000053.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10013036, whole genome shotgun sequence 9,548
VGRF01000054.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10013612, whole genome shotgun sequence 9,192
VGRF01000055.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10013707, whole genome shotgun sequence 9,130
VGRF01000056.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10014795, whole genome shotgun sequence 8,558
VGRF01000057.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10015085, whole genome shotgun sequence 8,437
VGRF01000058.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10021210, whole genome shotgun sequence 6,223
VGRF01000059.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10022115, whole genome shotgun sequence 5,991
VGRF01000060.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10027268, whole genome shotgun sequence 4,934
VGRF01000061.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10027783, whole genome shotgun sequence 4,849
VGRF01000062.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10034093, whole genome shotgun sequence 4,025
VGRF01000063.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10036809, whole genome shotgun sequence 3,755
VGRF01000064.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10037346, whole genome shotgun sequence 3,704
VGRF01000065.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10046408, whole genome shotgun sequence 3,044
VGRF01000066.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10046516, whole genome shotgun sequence 3,040
VGRF01000067.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10051343, whole genome shotgun sequence 2,777
VGRF01000068.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10052112, whole genome shotgun sequence 2,741
VGRF01000069.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10054246, whole genome shotgun sequence 2,644
VGRF01000070.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10057585, whole genome shotgun sequence 2,508
VGRF01000071.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10058133, whole genome shotgun sequence 2,488
VGRF01000072.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10059020, whole genome shotgun sequence 2,455
VGRF01000073.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10076580, whole genome shotgun sequence 1,965
VGRF01000074.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10086595, whole genome shotgun sequence 1,775
VGRF01000075.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10086858, whole genome shotgun sequence 1,771
VGRF01000076.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10093298, whole genome shotgun sequence 1,671
VGRF01000077.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10094922, whole genome shotgun sequence 1,648
VGRF01000078.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10100598, whole genome shotgun sequence 1,572
VGRF01000079.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10101533, whole genome shotgun sequence 1,560
VGRF01000080.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10107371, whole genome shotgun sequence 1,492
VGRF01000081.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10111603, whole genome shotgun sequence 1,448
VGRF01000082.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10114850, whole genome shotgun sequence 1,416
VGRF01000083.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10117816, whole genome shotgun sequence 1,388
VGRF01000084.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10120758, whole genome shotgun sequence 1,362
VGRF01000085.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10122004, whole genome shotgun sequence 1,351
VGRF01000086.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10125988, whole genome shotgun sequence 1,318
VGRF01000087.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10128534, whole genome shotgun sequence 1,298
VGRF01000088.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10130704, whole genome shotgun sequence 1,282
VGRF01000089.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10137406, whole genome shotgun sequence 1,233
VGRF01000090.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10140641, whole genome shotgun sequence 1,212
VGRF01000091.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10144396, whole genome shotgun sequence 1,188
VGRF01000092.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10144397, whole genome shotgun sequence 1,188
VGRF01000093.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10152579, whole genome shotgun sequence 1,141
VGRF01000094.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10153475, whole genome shotgun sequence 1,136
VGRF01000095.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10155719, whole genome shotgun sequence 1,124
VGRF01000096.1 MAG: Deltaproteobacteria bacterium isolate K_Offshore_120m_mx_162 K_Offshore_120m_mx_162_Ga0194131_10156437, whole genome shotgun sequence 1,120

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory