fast.genomicscompare 6,575 genera of bacteria & archaea

 

JAFKKF01 sp017305635 SCN18_31_3_15_R1_B_68_31

Genome identifier: GCA_017305635.1

NCBI assembly name: ASM1730563v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Kaistiaceae, JAFKKF01, JAFKKF01 sp017305635

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales

Scaffolds: 25

Genes: 4,309 Protein-coding: 4,223 RNAs: 55 pseudogenes: 31

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAFKKF010000001.1 MAG: Hyphomicrobiales bacterium isolate SCN18_31_3_15_R1_B_68_31 SCN18_31_3_15_R1_B_scaffold_33445, whole genome shotgun sequence 1,145
JAFKKF010000002.1 MAG: Hyphomicrobiales bacterium isolate SCN18_31_3_15_R1_B_68_31 SCN18_31_3_15_R1_B_scaffold_11888, whole genome shotgun sequence 2,362
JAFKKF010000003.1 MAG: Hyphomicrobiales bacterium isolate SCN18_31_3_15_R1_B_68_31 SCN18_31_3_15_R1_B_scaffold_1237, whole genome shotgun sequence 21,454
JAFKKF010000004.1 MAG: Hyphomicrobiales bacterium isolate SCN18_31_3_15_R1_B_68_31 SCN18_31_3_15_R1_B_scaffold_1238, whole genome shotgun sequence 21,452
JAFKKF010000005.1 MAG: Hyphomicrobiales bacterium isolate SCN18_31_3_15_R1_B_68_31 SCN18_31_3_15_R1_B_scaffold_3168, whole genome shotgun sequence 7,858
JAFKKF010000006.1 MAG: Hyphomicrobiales bacterium isolate SCN18_31_3_15_R1_B_68_31 SCN18_31_3_15_R1_B_scaffold_6, whole genome shotgun sequence 845,593
JAFKKF010000007.1 MAG: Hyphomicrobiales bacterium isolate SCN18_31_3_15_R1_B_68_31 SCN18_31_3_15_R1_B_scaffold_24, whole genome shotgun sequence 449,379
JAFKKF010000008.1 MAG: Hyphomicrobiales bacterium isolate SCN18_31_3_15_R1_B_68_31 SCN18_31_3_15_R1_B_scaffold_49, whole genome shotgun sequence 464,544
JAFKKF010000009.1 MAG: Hyphomicrobiales bacterium isolate SCN18_31_3_15_R1_B_68_31 SCN18_31_3_15_R1_B_scaffold_56, whole genome shotgun sequence 298,189
JAFKKF010000010.1 MAG: Hyphomicrobiales bacterium isolate SCN18_31_3_15_R1_B_68_31 SCN18_31_3_15_R1_B_scaffold_79, whole genome shotgun sequence 554,670
JAFKKF010000011.1 MAG: Hyphomicrobiales bacterium isolate SCN18_31_3_15_R1_B_68_31 SCN18_31_3_15_R1_B_scaffold_107, whole genome shotgun sequence 228,627
JAFKKF010000012.1 MAG: Hyphomicrobiales bacterium isolate SCN18_31_3_15_R1_B_68_31 SCN18_31_3_15_R1_B_scaffold_133, whole genome shotgun sequence 188,351
JAFKKF010000013.1 MAG: Hyphomicrobiales bacterium isolate SCN18_31_3_15_R1_B_68_31 SCN18_31_3_15_R1_B_scaffold_177, whole genome shotgun sequence 402,991
JAFKKF010000014.1 MAG: Hyphomicrobiales bacterium isolate SCN18_31_3_15_R1_B_68_31 SCN18_31_3_15_R1_B_scaffold_211, whole genome shotgun sequence 145,442
JAFKKF010000015.1 MAG: Hyphomicrobiales bacterium isolate SCN18_31_3_15_R1_B_68_31 SCN18_31_3_15_R1_B_scaffold_226, whole genome shotgun sequence 127,500
JAFKKF010000016.1 MAG: Hyphomicrobiales bacterium isolate SCN18_31_3_15_R1_B_68_31 SCN18_31_3_15_R1_B_scaffold_241, whole genome shotgun sequence 119,506
JAFKKF010000017.1 MAG: Hyphomicrobiales bacterium isolate SCN18_31_3_15_R1_B_68_31 SCN18_31_3_15_R1_B_scaffold_254, whole genome shotgun sequence 115,524
JAFKKF010000018.1 MAG: Hyphomicrobiales bacterium isolate SCN18_31_3_15_R1_B_68_31 SCN18_31_3_15_R1_B_scaffold_277, whole genome shotgun sequence 111,185
JAFKKF010000019.1 MAG: Hyphomicrobiales bacterium isolate SCN18_31_3_15_R1_B_68_31 SCN18_31_3_15_R1_B_scaffold_312, whole genome shotgun sequence 95,069
JAFKKF010000020.1 MAG: Hyphomicrobiales bacterium isolate SCN18_31_3_15_R1_B_68_31 SCN18_31_3_15_R1_B_scaffold_392, whole genome shotgun sequence 76,387
JAFKKF010000021.1 MAG: Hyphomicrobiales bacterium isolate SCN18_31_3_15_R1_B_68_31 SCN18_31_3_15_R1_B_scaffold_610, whole genome shotgun sequence 47,247
JAFKKF010000022.1 MAG: Hyphomicrobiales bacterium isolate SCN18_31_3_15_R1_B_68_31 SCN18_31_3_15_R1_B_scaffold_747, whole genome shotgun sequence 37,660
JAFKKF010000023.1 MAG: Hyphomicrobiales bacterium isolate SCN18_31_3_15_R1_B_68_31 SCN18_31_3_15_R1_B_scaffold_835, whole genome shotgun sequence 35,279
JAFKKF010000024.1 MAG: Hyphomicrobiales bacterium isolate SCN18_31_3_15_R1_B_68_31 SCN18_31_3_15_R1_B_scaffold_837, whole genome shotgun sequence 33,170
JAFKKF010000025.1 MAG: Hyphomicrobiales bacterium isolate SCN18_31_3_15_R1_B_68_31 SCN18_31_3_15_R1_B_scaffold_37872, whole genome shotgun sequence 1,047

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory