fast.genomicscompare 6,575 genera of bacteria & archaea

 

Tagaea sp017308135 SCN18_30_10_14_R3_P_65_206

Genome identifier: GCA_017308135.1

NCBI assembly name: ASM1730813v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, CACIAM-22H2, CACIAM-22H2, Tagaea, Tagaea sp017308135

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria

Scaffolds: 20

Genes: 5,135 Protein-coding: 5,048 RNAs: 53 pseudogenes: 34

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAFKFM010000001.1 MAG: Alphaproteobacteria bacterium isolate SCN18_30_10_14_R3_P_65_206 SCN18_30_10_14_R3_P_scaffold_11096, whole genome shotgun sequence 2,945
JAFKFM010000002.1 MAG: Alphaproteobacteria bacterium isolate SCN18_30_10_14_R3_P_65_206 SCN18_30_10_14_R3_P_scaffold_26544, whole genome shotgun sequence 1,630
JAFKFM010000003.1 MAG: Alphaproteobacteria bacterium isolate SCN18_30_10_14_R3_P_65_206 SCN18_30_10_14_R3_P_scaffold_1074, whole genome shotgun sequence 24,211
JAFKFM010000004.1 MAG: Alphaproteobacteria bacterium isolate SCN18_30_10_14_R3_P_65_206 SCN18_30_10_14_R3_P_scaffold_1893, whole genome shotgun sequence 13,596
JAFKFM010000005.1 MAG: Alphaproteobacteria bacterium isolate SCN18_30_10_14_R3_P_65_206 SCN18_30_10_14_R3_P_scaffold_13398, whole genome shotgun sequence 2,592
JAFKFM010000006.1 MAG: Alphaproteobacteria bacterium isolate SCN18_30_10_14_R3_P_65_206 SCN18_30_10_14_R3_P_scaffold_2, whole genome shotgun sequence 841,117
JAFKFM010000007.1 MAG: Alphaproteobacteria bacterium isolate SCN18_30_10_14_R3_P_65_206 SCN18_30_10_14_R3_P_scaffold_4, whole genome shotgun sequence 772,601
JAFKFM010000008.1 MAG: Alphaproteobacteria bacterium isolate SCN18_30_10_14_R3_P_65_206 SCN18_30_10_14_R3_P_scaffold_5, whole genome shotgun sequence 1,027,480
JAFKFM010000009.1 MAG: Alphaproteobacteria bacterium isolate SCN18_30_10_14_R3_P_65_206 SCN18_30_10_14_R3_P_scaffold_9, whole genome shotgun sequence 726,933
JAFKFM010000010.1 MAG: Alphaproteobacteria bacterium isolate SCN18_30_10_14_R3_P_65_206 SCN18_30_10_14_R3_P_scaffold_16, whole genome shotgun sequence 514,544
JAFKFM010000011.1 MAG: Alphaproteobacteria bacterium isolate SCN18_30_10_14_R3_P_65_206 SCN18_30_10_14_R3_P_scaffold_35, whole genome shotgun sequence 428,911
JAFKFM010000012.1 MAG: Alphaproteobacteria bacterium isolate SCN18_30_10_14_R3_P_65_206 SCN18_30_10_14_R3_P_scaffold_82, whole genome shotgun sequence 216,858
JAFKFM010000013.1 MAG: Alphaproteobacteria bacterium isolate SCN18_30_10_14_R3_P_65_206 SCN18_30_10_14_R3_P_scaffold_87, whole genome shotgun sequence 211,281
JAFKFM010000014.1 MAG: Alphaproteobacteria bacterium isolate SCN18_30_10_14_R3_P_65_206 SCN18_30_10_14_R3_P_scaffold_142, whole genome shotgun sequence 142,163
JAFKFM010000015.1 MAG: Alphaproteobacteria bacterium isolate SCN18_30_10_14_R3_P_65_206 SCN18_30_10_14_R3_P_scaffold_147, whole genome shotgun sequence 139,399
JAFKFM010000016.1 MAG: Alphaproteobacteria bacterium isolate SCN18_30_10_14_R3_P_65_206 SCN18_30_10_14_R3_P_scaffold_165, whole genome shotgun sequence 128,505
JAFKFM010000017.1 MAG: Alphaproteobacteria bacterium isolate SCN18_30_10_14_R3_P_65_206 SCN18_30_10_14_R3_P_scaffold_5144, whole genome shotgun sequence 5,294
JAFKFM010000018.1 MAG: Alphaproteobacteria bacterium isolate SCN18_30_10_14_R3_P_65_206 SCN18_30_10_14_R3_P_scaffold_42282, whole genome shotgun sequence 1,164
JAFKFM010000019.1 MAG: Alphaproteobacteria bacterium isolate SCN18_30_10_14_R3_P_65_206 SCN18_30_10_14_R3_P_scaffold_48616, whole genome shotgun sequence 1,050
JAFKFM010000020.1 MAG: Alphaproteobacteria bacterium isolate SCN18_30_10_14_R3_P_65_206 SCN18_30_10_14_R3_P_scaffold_93517, whole genome shotgun sequence 1,183

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory