fast.genomicscompare 6,575 genera of bacteria & archaea

 

UBA9659 sp017642855 HXMU1422-5

Genome identifier: GCA_017642855.1

NCBI assembly name: ASM1764285v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales, Azotimanducaceae_A, UBA9659, UBA9659 sp017642855

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales

Scaffolds: 24

Genes: 3,821 Protein-coding: 3,759 RNAs: 54 pseudogenes: 8

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAEPOO010000001.1 MAG: Pseudomonadales bacterium isolate HXMU1422-5 NODE_1_length_2456908_cov_16.514730, whole genome shotgun sequence 2,456,908
JAEPOO010000002.1 MAG: Pseudomonadales bacterium isolate HXMU1422-5 NODE_2_length_995344_cov_17.597499, whole genome shotgun sequence 995,344
JAEPOO010000003.1 MAG: Pseudomonadales bacterium isolate HXMU1422-5 NODE_3_length_214291_cov_16.670054, whole genome shotgun sequence 214,291
JAEPOO010000004.1 MAG: Pseudomonadales bacterium isolate HXMU1422-5 NODE_4_length_164983_cov_18.097261, whole genome shotgun sequence 164,983
JAEPOO010000005.1 MAG: Pseudomonadales bacterium isolate HXMU1422-5 NODE_5_length_125151_cov_17.290804, whole genome shotgun sequence 125,151
JAEPOO010000006.1 MAG: Pseudomonadales bacterium isolate HXMU1422-5 NODE_6_length_15370_cov_17.093441, whole genome shotgun sequence 15,370
JAEPOO010000007.1 MAG: Pseudomonadales bacterium isolate HXMU1422-5 NODE_7_length_13250_cov_16.571092, whole genome shotgun sequence 13,250
JAEPOO010000008.1 MAG: Pseudomonadales bacterium isolate HXMU1422-5 NODE_8_length_12572_cov_16.067707, whole genome shotgun sequence 12,572
JAEPOO010000009.1 MAG: Pseudomonadales bacterium isolate HXMU1422-5 NODE_9_length_5838_cov_17.916681, whole genome shotgun sequence 5,838
JAEPOO010000010.1 MAG: Pseudomonadales bacterium isolate HXMU1422-5 NODE_10_length_979_cov_8.104213, whole genome shotgun sequence 979
JAEPOO010000011.1 MAG: Pseudomonadales bacterium isolate HXMU1422-5 NODE_11_length_948_cov_15.694604, whole genome shotgun sequence 948
JAEPOO010000012.1 MAG: Pseudomonadales bacterium isolate HXMU1422-5 NODE_12_length_863_cov_6.706107, whole genome shotgun sequence 863
JAEPOO010000013.1 MAG: Pseudomonadales bacterium isolate HXMU1422-5 NODE_13_length_715_cov_1.061129, whole genome shotgun sequence 715
JAEPOO010000014.1 MAG: Pseudomonadales bacterium isolate HXMU1422-5 NODE_14_length_649_cov_5.872378, whole genome shotgun sequence 649
JAEPOO010000015.1 MAG: Pseudomonadales bacterium isolate HXMU1422-5 NODE_15_length_636_cov_3.177102, whole genome shotgun sequence 636
JAEPOO010000016.1 MAG: Pseudomonadales bacterium isolate HXMU1422-5 NODE_16_length_632_cov_7.583784, whole genome shotgun sequence 632
JAEPOO010000017.1 MAG: Pseudomonadales bacterium isolate HXMU1422-5 NODE_17_length_627_cov_14.538182, whole genome shotgun sequence 627
JAEPOO010000018.1 MAG: Pseudomonadales bacterium isolate HXMU1422-5 NODE_18_length_615_cov_2.200743, whole genome shotgun sequence 615
JAEPOO010000019.1 MAG: Pseudomonadales bacterium isolate HXMU1422-5 NODE_19_length_608_cov_42.749529, whole genome shotgun sequence 608
JAEPOO010000020.1 MAG: Pseudomonadales bacterium isolate HXMU1422-5 NODE_20_length_601_cov_6.778626, whole genome shotgun sequence 601
JAEPOO010000021.1 MAG: Pseudomonadales bacterium isolate HXMU1422-5 NODE_21_length_591_cov_8.603113, whole genome shotgun sequence 591
JAEPOO010000022.1 MAG: Pseudomonadales bacterium isolate HXMU1422-5 NODE_22_length_585_cov_1.320866, whole genome shotgun sequence 585
JAEPOO010000023.1 MAG: Pseudomonadales bacterium isolate HXMU1422-5 NODE_23_length_527_cov_1.935556, whole genome shotgun sequence 527
JAEPOO010000024.1 MAG: Pseudomonadales bacterium isolate HXMU1422-5 NODE_24_length_515_cov_2.365297, whole genome shotgun sequence 515

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory