fast.genomicscompare 6,575 genera of bacteria & archaea

 

MH13 sp017642935 HXMU1422-12

Genome identifier: GCA_017642935.1

NCBI assembly name: ASM1764293v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, MH13, MH13, MH13 sp017642935

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales

Scaffolds: 17

Genes: 3,573 Protein-coding: 3,505 RNAs: 55 pseudogenes: 13

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAEPOK010000001.1 MAG: Hyphomicrobiales bacterium isolate HXMU1422-12 NODE_1_length_1967898_cov_86.513439, whole genome shotgun sequence 1,967,898
JAEPOK010000002.1 MAG: Hyphomicrobiales bacterium isolate HXMU1422-12 NODE_2_length_1448198_cov_92.805046, whole genome shotgun sequence 1,448,198
JAEPOK010000003.1 MAG: Hyphomicrobiales bacterium isolate HXMU1422-12 NODE_3_length_309181_cov_92.690952, whole genome shotgun sequence 309,181
JAEPOK010000004.1 MAG: Hyphomicrobiales bacterium isolate HXMU1422-12 NODE_4_length_5234_cov_89.745976, whole genome shotgun sequence 5,234
JAEPOK010000005.1 MAG: Hyphomicrobiales bacterium isolate HXMU1422-12 NODE_5_length_3172_cov_127.970921, whole genome shotgun sequence 3,172
JAEPOK010000006.1 MAG: Hyphomicrobiales bacterium isolate HXMU1422-12 NODE_6_length_1128_cov_116.271170, whole genome shotgun sequence 1,128
JAEPOK010000007.1 MAG: Hyphomicrobiales bacterium isolate HXMU1422-12 NODE_7_length_1023_cov_4.614165, whole genome shotgun sequence 1,023
JAEPOK010000008.1 MAG: Hyphomicrobiales bacterium isolate HXMU1422-12 NODE_8_length_934_cov_18.025671, whole genome shotgun sequence 934
JAEPOK010000009.1 MAG: Hyphomicrobiales bacterium isolate HXMU1422-12 NODE_9_length_750_cov_5.337296, whole genome shotgun sequence 750
JAEPOK010000010.1 MAG: Hyphomicrobiales bacterium isolate HXMU1422-12 NODE_10_length_731_cov_1.131498, whole genome shotgun sequence 731
JAEPOK010000011.1 MAG: Hyphomicrobiales bacterium isolate HXMU1422-12 NODE_11_length_641_cov_1.968085, whole genome shotgun sequence 641
JAEPOK010000012.1 MAG: Hyphomicrobiales bacterium isolate HXMU1422-12 NODE_12_length_632_cov_1.300901, whole genome shotgun sequence 632
JAEPOK010000013.1 MAG: Hyphomicrobiales bacterium isolate HXMU1422-12 NODE_13_length_577_cov_2.220000, whole genome shotgun sequence 577
JAEPOK010000014.1 MAG: Hyphomicrobiales bacterium isolate HXMU1422-12 NODE_14_length_539_cov_1.281385, whole genome shotgun sequence 539
JAEPOK010000015.1 MAG: Hyphomicrobiales bacterium isolate HXMU1422-12 NODE_15_length_536_cov_1.450980, whole genome shotgun sequence 536
JAEPOK010000016.1 MAG: Hyphomicrobiales bacterium isolate HXMU1422-12 NODE_16_length_532_cov_2.597802, whole genome shotgun sequence 532
JAEPOK010000017.1 MAG: Hyphomicrobiales bacterium isolate HXMU1422-12 NODE_17_length_520_cov_1.169300, whole genome shotgun sequence 520

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory