fast.genomicscompare 6,575 genera of bacteria & archaea

 

JAALLB01 sp017643495 HCUG1439-5

Genome identifier: GCA_017643495.1

NCBI assembly name: ASM1764349v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Rhizobiaceae, JAALLB01, JAALLB01 sp017643495

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Rhizobiaceae

Scaffolds: 18

Genes: 3,646 Protein-coding: 3,573 RNAs: 50 pseudogenes: 23

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAEPNK010000001.1 MAG: Rhizobiaceae bacterium isolate HCUG1439-5 NODE_1_length_2050937_cov_8.589949, whole genome shotgun sequence 2,050,937
JAEPNK010000002.1 MAG: Rhizobiaceae bacterium isolate HCUG1439-5 NODE_2_length_1386156_cov_8.464627, whole genome shotgun sequence 1,386,156
JAEPNK010000003.1 MAG: Rhizobiaceae bacterium isolate HCUG1439-5 NODE_3_length_148601_cov_8.246553, whole genome shotgun sequence 148,601
JAEPNK010000004.1 MAG: Rhizobiaceae bacterium isolate HCUG1439-5 NODE_4_length_62078_cov_8.286302, whole genome shotgun sequence 62,078
JAEPNK010000005.1 MAG: Rhizobiaceae bacterium isolate HCUG1439-5 NODE_5_length_39120_cov_8.486566, whole genome shotgun sequence 39,120
JAEPNK010000006.1 MAG: Rhizobiaceae bacterium isolate HCUG1439-5 NODE_6_length_38403_cov_7.683687, whole genome shotgun sequence 38,403
JAEPNK010000007.1 MAG: Rhizobiaceae bacterium isolate HCUG1439-5 NODE_7_length_3652_cov_4.241678, whole genome shotgun sequence 3,652
JAEPNK010000008.1 MAG: Rhizobiaceae bacterium isolate HCUG1439-5 NODE_8_length_1827_cov_2.336571, whole genome shotgun sequence 1,827
JAEPNK010000009.1 MAG: Rhizobiaceae bacterium isolate HCUG1439-5 NODE_9_length_1304_cov_6.565607, whole genome shotgun sequence 1,304
JAEPNK010000010.1 MAG: Rhizobiaceae bacterium isolate HCUG1439-5 NODE_10_length_1156_cov_6.396664, whole genome shotgun sequence 1,156
JAEPNK010000011.1 MAG: Rhizobiaceae bacterium isolate HCUG1439-5 NODE_11_length_647_cov_1.817544, whole genome shotgun sequence 647
JAEPNK010000012.1 MAG: Rhizobiaceae bacterium isolate HCUG1439-5 NODE_12_length_605_cov_3.083333, whole genome shotgun sequence 605
JAEPNK010000013.1 MAG: Rhizobiaceae bacterium isolate HCUG1439-5 NODE_13_length_602_cov_1.973333, whole genome shotgun sequence 602
JAEPNK010000014.1 MAG: Rhizobiaceae bacterium isolate HCUG1439-5 NODE_14_length_552_cov_1.429474, whole genome shotgun sequence 552
JAEPNK010000015.1 MAG: Rhizobiaceae bacterium isolate HCUG1439-5 NODE_15_length_550_cov_9.023256, whole genome shotgun sequence 550
JAEPNK010000016.1 MAG: Rhizobiaceae bacterium isolate HCUG1439-5 NODE_16_length_538_cov_1.917570, whole genome shotgun sequence 538
JAEPNK010000017.1 MAG: Rhizobiaceae bacterium isolate HCUG1439-5 NODE_17_length_523_cov_1.813901, whole genome shotgun sequence 523
JAEPNK010000018.1 MAG: Rhizobiaceae bacterium isolate HCUG1439-5 NODE_18_length_502_cov_1.741176, whole genome shotgun sequence 502

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory