fast.genomicscompare 6,575 genera of bacteria & archaea

 

RBG-16-66-30 sp012516875 Go_SlDig_bin_238

Genome identifier: GCA_017999365.1

NCBI assembly name: ASM1799936v1

GTDB taxonomy: Bacteria, Acidobacteriota, Aminicenantia, Aminicenantales, RBG-16-66-30, RBG-16-66-30, RBG-16-66-30 sp012516875

NCBI taxonomy: Bacteria, Candidatus Aminicenantes

Scaffolds: 7

Genes: 2,500 Protein-coding: 2,436 RNAs: 50 pseudogenes: 14

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAGNLW010000001.1 Candidatus Aminicenantes bacterium isolate Go_SlDig_bin_238 Go_SlDig_2_length_1320124_cov_13.115983, whole genome shotgun sequence 1,320,124
JAGNLW010000002.1 Candidatus Aminicenantes bacterium isolate Go_SlDig_bin_238 Go_SlDig_9_length_445977_cov_14.670228, whole genome shotgun sequence 445,977
JAGNLW010000003.1 Candidatus Aminicenantes bacterium isolate Go_SlDig_bin_238 Go_SlDig_11_length_403081_cov_13.366359, whole genome shotgun sequence 403,081
JAGNLW010000004.1 Candidatus Aminicenantes bacterium isolate Go_SlDig_bin_238 Go_SlDig_66_length_230361_cov_12.138003, whole genome shotgun sequence 230,361
JAGNLW010000005.1 Candidatus Aminicenantes bacterium isolate Go_SlDig_bin_238 Go_SlDig_100_length_200490_cov_11.900451, whole genome shotgun sequence 200,490
JAGNLW010000006.1 Candidatus Aminicenantes bacterium isolate Go_SlDig_bin_238 Go_SlDig_106_length_195527_cov_15.529903, whole genome shotgun sequence 195,527
JAGNLW010000007.1 Candidatus Aminicenantes bacterium isolate Go_SlDig_bin_238 Go_SlDig_6904_length_21513_cov_12.585851, whole genome shotgun sequence 21,513

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory