fast.genomicscompare 6,575 genera of bacteria & archaea

 

JAGNLM01 sp017999615 Go_UH_bin_194

Genome identifier: GCA_017999615.1

NCBI assembly name: ASM1799961v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, JAABTG01, JAABTG01, JAGNLM01, JAGNLM01 sp017999615

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria

Scaffolds: 21

Genes: 2,308 Protein-coding: 2,235 RNAs: 53 pseudogenes: 20

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAGNLM010000001.1 MAG: Gammaproteobacteria bacterium isolate Go_UH_bin_194 Go_UH_1_length_744101_cov_25.351836, whole genome shotgun sequence 744,101
JAGNLM010000002.1 MAG: Gammaproteobacteria bacterium isolate Go_UH_bin_194 Go_UH_4_length_262558_cov_25.754899, whole genome shotgun sequence 262,558
JAGNLM010000003.1 MAG: Gammaproteobacteria bacterium isolate Go_UH_bin_194 Go_UH_5_length_245603_cov_26.407274, whole genome shotgun sequence 245,603
JAGNLM010000004.1 MAG: Gammaproteobacteria bacterium isolate Go_UH_bin_194 Go_UH_12_length_153865_cov_25.337821, whole genome shotgun sequence 153,865
JAGNLM010000005.1 MAG: Gammaproteobacteria bacterium isolate Go_UH_bin_194 Go_UH_13_length_150161_cov_25.723376, whole genome shotgun sequence 150,161
JAGNLM010000006.1 MAG: Gammaproteobacteria bacterium isolate Go_UH_bin_194 Go_UH_25_length_116850_cov_24.898589, whole genome shotgun sequence 116,850
JAGNLM010000007.1 MAG: Gammaproteobacteria bacterium isolate Go_UH_bin_194 Go_UH_30_length_105884_cov_30.695699, whole genome shotgun sequence 105,884
JAGNLM010000008.1 MAG: Gammaproteobacteria bacterium isolate Go_UH_bin_194 Go_UH_35_length_100189_cov_24.397743, whole genome shotgun sequence 100,189
JAGNLM010000009.1 MAG: Gammaproteobacteria bacterium isolate Go_UH_bin_194 Go_UH_39_length_94302_cov_27.117675, whole genome shotgun sequence 94,302
JAGNLM010000010.1 MAG: Gammaproteobacteria bacterium isolate Go_UH_bin_194 Go_UH_50_length_84699_cov_24.964397, whole genome shotgun sequence 84,699
JAGNLM010000011.1 MAG: Gammaproteobacteria bacterium isolate Go_UH_bin_194 Go_UH_171_length_58044_cov_27.361207, whole genome shotgun sequence 58,044
JAGNLM010000012.1 MAG: Gammaproteobacteria bacterium isolate Go_UH_bin_194 Go_UH_211_length_52870_cov_27.856967, whole genome shotgun sequence 52,870
JAGNLM010000013.1 MAG: Gammaproteobacteria bacterium isolate Go_UH_bin_194 Go_UH_228_length_51889_cov_27.629612, whole genome shotgun sequence 51,889
JAGNLM010000014.1 MAG: Gammaproteobacteria bacterium isolate Go_UH_bin_194 Go_UH_233_length_51674_cov_27.898345, whole genome shotgun sequence 51,674
JAGNLM010000015.1 MAG: Gammaproteobacteria bacterium isolate Go_UH_bin_194 Go_UH_392_length_42103_cov_24.067705, whole genome shotgun sequence 42,103
JAGNLM010000016.1 MAG: Gammaproteobacteria bacterium isolate Go_UH_bin_194 Go_UH_427_length_40933_cov_26.741509, whole genome shotgun sequence 40,933
JAGNLM010000017.1 MAG: Gammaproteobacteria bacterium isolate Go_UH_bin_194 Go_UH_624_length_35254_cov_26.922254, whole genome shotgun sequence 35,254
JAGNLM010000018.1 MAG: Gammaproteobacteria bacterium isolate Go_UH_bin_194 Go_UH_1321_length_25895_cov_26.080953, whole genome shotgun sequence 25,895
JAGNLM010000019.1 MAG: Gammaproteobacteria bacterium isolate Go_UH_bin_194 Go_UH_1649_length_23593_cov_27.476903, whole genome shotgun sequence 23,593
JAGNLM010000020.1 MAG: Gammaproteobacteria bacterium isolate Go_UH_bin_194 Go_UH_1953_length_21720_cov_26.141990, whole genome shotgun sequence 21,720
JAGNLM010000021.1 MAG: Gammaproteobacteria bacterium isolate Go_UH_bin_194 Go_UH_14285_length_7878_cov_26.563024, whole genome shotgun sequence 7,878

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory