fast.genomicscompare 6,575 genera of bacteria & archaea

 

UBA7657 sp017999645 Go_SlAct_bin_278

Genome identifier: GCA_017999645.1

NCBI assembly name: ASM1799964v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Micavibrionales, Micavibrionaceae, UBA7657, UBA7657 sp017999645

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria

Scaffolds: 23

Genes: 2,122 Protein-coding: 2,073 RNAs: 45 pseudogenes: 4

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAGNLJ010000001.1 MAG: Alphaproteobacteria bacterium isolate Go_SlAct_bin_278 Go_SlAct_31_length_315204_cov_8.899117, whole genome shotgun sequence 315,204
JAGNLJ010000002.1 MAG: Alphaproteobacteria bacterium isolate Go_SlAct_bin_278 Go_SlAct_72_length_232756_cov_8.176332, whole genome shotgun sequence 232,756
JAGNLJ010000003.1 MAG: Alphaproteobacteria bacterium isolate Go_SlAct_bin_278 Go_SlAct_77_length_224882_cov_8.473929, whole genome shotgun sequence 224,882
JAGNLJ010000004.1 MAG: Alphaproteobacteria bacterium isolate Go_SlAct_bin_278 Go_SlAct_138_length_175413_cov_7.861101, whole genome shotgun sequence 175,413
JAGNLJ010000005.1 MAG: Alphaproteobacteria bacterium isolate Go_SlAct_bin_278 Go_SlAct_211_length_148435_cov_8.338505, whole genome shotgun sequence 148,435
JAGNLJ010000006.1 MAG: Alphaproteobacteria bacterium isolate Go_SlAct_bin_278 Go_SlAct_273_length_131557_cov_8.042022, whole genome shotgun sequence 131,557
JAGNLJ010000007.1 MAG: Alphaproteobacteria bacterium isolate Go_SlAct_bin_278 Go_SlAct_313_length_125283_cov_8.759213, whole genome shotgun sequence 125,283
JAGNLJ010000008.1 MAG: Alphaproteobacteria bacterium isolate Go_SlAct_bin_278 Go_SlAct_314_length_125213_cov_7.688151, whole genome shotgun sequence 125,213
JAGNLJ010000009.1 MAG: Alphaproteobacteria bacterium isolate Go_SlAct_bin_278 Go_SlAct_650_length_89549_cov_8.040013, whole genome shotgun sequence 89,549
JAGNLJ010000010.1 MAG: Alphaproteobacteria bacterium isolate Go_SlAct_bin_278 Go_SlAct_939_length_75099_cov_8.780065, whole genome shotgun sequence 75,099
JAGNLJ010000011.1 MAG: Alphaproteobacteria bacterium isolate Go_SlAct_bin_278 Go_SlAct_975_length_73827_cov_7.879281, whole genome shotgun sequence 73,827
JAGNLJ010000012.1 MAG: Alphaproteobacteria bacterium isolate Go_SlAct_bin_278 Go_SlAct_1282_length_64342_cov_8.410434, whole genome shotgun sequence 64,342
JAGNLJ010000013.1 MAG: Alphaproteobacteria bacterium isolate Go_SlAct_bin_278 Go_SlAct_1444_length_60543_cov_7.925798, whole genome shotgun sequence 60,543
JAGNLJ010000014.1 MAG: Alphaproteobacteria bacterium isolate Go_SlAct_bin_278 Go_SlAct_2037_length_49932_cov_7.926313, whole genome shotgun sequence 49,932
JAGNLJ010000015.1 MAG: Alphaproteobacteria bacterium isolate Go_SlAct_bin_278 Go_SlAct_3481_length_36827_cov_7.278202, whole genome shotgun sequence 36,827
JAGNLJ010000016.1 MAG: Alphaproteobacteria bacterium isolate Go_SlAct_bin_278 Go_SlAct_4048_length_33897_cov_7.082973, whole genome shotgun sequence 33,897
JAGNLJ010000017.1 MAG: Alphaproteobacteria bacterium isolate Go_SlAct_bin_278 Go_SlAct_4658_length_31291_cov_7.607239, whole genome shotgun sequence 31,291
JAGNLJ010000018.1 MAG: Alphaproteobacteria bacterium isolate Go_SlAct_bin_278 Go_SlAct_13829_length_16734_cov_8.736497, whole genome shotgun sequence 16,734
JAGNLJ010000019.1 MAG: Alphaproteobacteria bacterium isolate Go_SlAct_bin_278 Go_SlAct_22481_length_12634_cov_8.013592, whole genome shotgun sequence 12,634
JAGNLJ010000020.1 MAG: Alphaproteobacteria bacterium isolate Go_SlAct_bin_278 Go_SlAct_24469_length_12021_cov_8.359677, whole genome shotgun sequence 12,021
JAGNLJ010000021.1 MAG: Alphaproteobacteria bacterium isolate Go_SlAct_bin_278 Go_SlAct_31018_length_10458_cov_8.413222, whole genome shotgun sequence 10,458
JAGNLJ010000022.1 MAG: Alphaproteobacteria bacterium isolate Go_SlAct_bin_278 Go_SlAct_38274_length_9264_cov_7.301302, whole genome shotgun sequence 9,264
JAGNLJ010000023.1 MAG: Alphaproteobacteria bacterium isolate Go_SlAct_bin_278 Go_SlAct_154556_length_4188_cov_6.257818, whole genome shotgun sequence 4,188

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory