fast.genomicscompare 6,575 genera of bacteria & archaea

 

JAGNHS01 sp018001635 Gw_Eff_bin_446

Genome identifier: GCA_018001635.1

NCBI assembly name: ASM1800163v1

GTDB taxonomy: Bacteria, Bdellovibrionota, UBA2428, UBA2428, UBA2428, JAGNHS01, JAGNHS01 sp018001635

NCBI taxonomy: Bacteria, Pseudomonadota

Scaffolds: 95

Genes: 2,687 Protein-coding: 2,633 RNAs: 44 pseudogenes: 10

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAGNHS010000001.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_150_length_125497_cov_6.397424, whole genome shotgun sequence 125,497
JAGNHS010000002.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_248_length_102060_cov_6.559240, whole genome shotgun sequence 102,060
JAGNHS010000003.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_350_length_85674_cov_6.389318, whole genome shotgun sequence 85,674
JAGNHS010000004.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_377_length_82085_cov_6.162156, whole genome shotgun sequence 82,085
JAGNHS010000005.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_393_length_80284_cov_6.414299, whole genome shotgun sequence 80,284
JAGNHS010000006.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_398_length_80073_cov_6.522503, whole genome shotgun sequence 80,073
JAGNHS010000007.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_427_length_76944_cov_6.449197, whole genome shotgun sequence 76,944
JAGNHS010000008.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_518_length_70090_cov_6.727270, whole genome shotgun sequence 70,090
JAGNHS010000009.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_551_length_68132_cov_6.553268, whole genome shotgun sequence 68,132
JAGNHS010000010.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_686_length_62376_cov_6.354881, whole genome shotgun sequence 62,376
JAGNHS010000011.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_695_length_61758_cov_6.462559, whole genome shotgun sequence 61,758
JAGNHS010000012.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_707_length_61184_cov_6.409257, whole genome shotgun sequence 61,184
JAGNHS010000013.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_813_length_57211_cov_6.442646, whole genome shotgun sequence 57,211
JAGNHS010000014.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_894_length_54919_cov_6.580687, whole genome shotgun sequence 54,919
JAGNHS010000015.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_915_length_54317_cov_6.562318, whole genome shotgun sequence 54,317
JAGNHS010000016.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_1033_length_50503_cov_6.752898, whole genome shotgun sequence 50,503
JAGNHS010000017.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_1050_length_50262_cov_6.918640, whole genome shotgun sequence 50,262
JAGNHS010000018.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_1097_length_49156_cov_6.552958, whole genome shotgun sequence 49,156
JAGNHS010000019.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_1125_length_48488_cov_6.583032, whole genome shotgun sequence 48,488
JAGNHS010000020.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_1210_length_46840_cov_6.438336, whole genome shotgun sequence 46,840
JAGNHS010000021.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_1237_length_46248_cov_6.250472, whole genome shotgun sequence 46,248
JAGNHS010000022.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_1361_length_44356_cov_6.702119, whole genome shotgun sequence 44,356
JAGNHS010000023.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_1364_length_44301_cov_6.654706, whole genome shotgun sequence 44,301
JAGNHS010000024.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_1433_length_43125_cov_6.467952, whole genome shotgun sequence 43,125
JAGNHS010000025.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_1519_length_42089_cov_6.228874, whole genome shotgun sequence 42,089
JAGNHS010000026.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_1553_length_41553_cov_6.692560, whole genome shotgun sequence 41,553
JAGNHS010000027.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_1627_length_40676_cov_6.420972, whole genome shotgun sequence 40,676
JAGNHS010000028.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_1728_length_39427_cov_6.686183, whole genome shotgun sequence 39,427
JAGNHS010000029.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_1812_length_38653_cov_6.523620, whole genome shotgun sequence 38,653
JAGNHS010000030.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_1988_length_36870_cov_6.389054, whole genome shotgun sequence 36,870
JAGNHS010000031.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_2022_length_36552_cov_6.306850, whole genome shotgun sequence 36,552
JAGNHS010000032.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_2067_length_36169_cov_5.997864, whole genome shotgun sequence 36,169
JAGNHS010000033.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_2110_length_35817_cov_6.545027, whole genome shotgun sequence 35,817
JAGNHS010000034.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_2226_length_34857_cov_6.591045, whole genome shotgun sequence 34,857
JAGNHS010000035.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_2657_length_31637_cov_6.748334, whole genome shotgun sequence 31,637
JAGNHS010000036.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_2864_length_30171_cov_6.514878, whole genome shotgun sequence 30,171
JAGNHS010000037.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_2961_length_29450_cov_6.799918, whole genome shotgun sequence 29,450
JAGNHS010000038.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_3003_length_29196_cov_6.456500, whole genome shotgun sequence 29,196
JAGNHS010000039.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_3237_length_27847_cov_6.456457, whole genome shotgun sequence 27,847
JAGNHS010000040.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_3308_length_27462_cov_6.657728, whole genome shotgun sequence 27,462
JAGNHS010000041.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_3624_length_26016_cov_6.394221, whole genome shotgun sequence 26,016
JAGNHS010000042.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_3626_length_26014_cov_6.473249, whole genome shotgun sequence 26,014
JAGNHS010000043.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_3629_length_25999_cov_6.158125, whole genome shotgun sequence 25,999
JAGNHS010000044.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_3648_length_25914_cov_6.594020, whole genome shotgun sequence 25,914
JAGNHS010000045.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_4072_length_24281_cov_6.457150, whole genome shotgun sequence 24,281
JAGNHS010000046.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_4182_length_23896_cov_6.693677, whole genome shotgun sequence 23,896
JAGNHS010000047.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_4279_length_23606_cov_6.977256, whole genome shotgun sequence 23,606
JAGNHS010000048.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_4326_length_23474_cov_6.262175, whole genome shotgun sequence 23,474
JAGNHS010000049.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_4345_length_23395_cov_6.678700, whole genome shotgun sequence 23,395
JAGNHS010000050.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_4835_length_21950_cov_5.980433, whole genome shotgun sequence 21,950
JAGNHS010000051.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_5586_length_20116_cov_5.641403, whole genome shotgun sequence 20,116
JAGNHS010000052.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_5688_length_19928_cov_7.235089, whole genome shotgun sequence 19,928
JAGNHS010000053.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_5795_length_19682_cov_6.144669, whole genome shotgun sequence 19,682
JAGNHS010000054.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_6034_length_19186_cov_6.253371, whole genome shotgun sequence 19,186
JAGNHS010000055.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_6290_length_18716_cov_5.813868, whole genome shotgun sequence 18,716
JAGNHS010000056.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_6567_length_18188_cov_6.819777, whole genome shotgun sequence 18,188
JAGNHS010000057.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_7219_length_17154_cov_6.738885, whole genome shotgun sequence 17,154
JAGNHS010000058.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_7341_length_16995_cov_6.248636, whole genome shotgun sequence 16,995
JAGNHS010000059.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_7812_length_16408_cov_6.084454, whole genome shotgun sequence 16,408
JAGNHS010000060.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_7840_length_16368_cov_5.990025, whole genome shotgun sequence 16,368
JAGNHS010000061.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_7960_length_16209_cov_6.168822, whole genome shotgun sequence 16,209
JAGNHS010000062.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_8532_length_15547_cov_6.546563, whole genome shotgun sequence 15,547
JAGNHS010000063.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_8775_length_15276_cov_7.352102, whole genome shotgun sequence 15,276
JAGNHS010000064.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_9218_length_14844_cov_5.967385, whole genome shotgun sequence 14,844
JAGNHS010000065.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_11344_length_13126_cov_6.078698, whole genome shotgun sequence 13,126
JAGNHS010000066.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_12007_length_12695_cov_6.384548, whole genome shotgun sequence 12,695
JAGNHS010000067.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_12462_length_12412_cov_6.581441, whole genome shotgun sequence 12,412
JAGNHS010000068.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_13145_length_12005_cov_6.552702, whole genome shotgun sequence 12,005
JAGNHS010000069.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_13752_length_11676_cov_6.013854, whole genome shotgun sequence 11,676
JAGNHS010000070.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_13970_length_11571_cov_6.490213, whole genome shotgun sequence 11,571
JAGNHS010000071.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_14231_length_11436_cov_6.587762, whole genome shotgun sequence 11,436
JAGNHS010000072.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_14527_length_11285_cov_6.311077, whole genome shotgun sequence 11,285
JAGNHS010000073.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_14941_length_11093_cov_6.155572, whole genome shotgun sequence 11,093
JAGNHS010000074.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_16727_length_10365_cov_6.176011, whole genome shotgun sequence 10,365
JAGNHS010000075.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_16993_length_10267_cov_6.389842, whole genome shotgun sequence 10,267
JAGNHS010000076.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_19860_length_9362_cov_5.831727, whole genome shotgun sequence 9,362
JAGNHS010000077.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_19916_length_9348_cov_6.904674, whole genome shotgun sequence 9,348
JAGNHS010000078.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_21449_length_8946_cov_5.939449, whole genome shotgun sequence 8,946
JAGNHS010000079.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_22958_length_8595_cov_6.756023, whole genome shotgun sequence 8,595
JAGNHS010000080.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_23656_length_8448_cov_5.931859, whole genome shotgun sequence 8,448
JAGNHS010000081.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_24115_length_8353_cov_6.233771, whole genome shotgun sequence 8,353
JAGNHS010000082.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_24802_length_8215_cov_6.571340, whole genome shotgun sequence 8,215
JAGNHS010000083.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_26572_length_7879_cov_5.944014, whole genome shotgun sequence 7,879
JAGNHS010000084.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_27895_length_7649_cov_8.071789, whole genome shotgun sequence 7,649
JAGNHS010000085.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_32125_length_7050_cov_6.522461, whole genome shotgun sequence 7,050
JAGNHS010000086.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_41506_length_6082_cov_5.347943, whole genome shotgun sequence 6,082
JAGNHS010000087.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_45322_length_5789_cov_5.919286, whole genome shotgun sequence 5,789
JAGNHS010000088.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_54228_length_5224_cov_6.305474, whole genome shotgun sequence 5,224
JAGNHS010000089.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_77807_length_4270_cov_6.398262, whole genome shotgun sequence 4,270
JAGNHS010000090.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_80742_length_4185_cov_6.744455, whole genome shotgun sequence 4,185
JAGNHS010000091.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_89229_length_3964_cov_6.224133, whole genome shotgun sequence 3,964
JAGNHS010000092.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_98889_length_3753_cov_8.888307, whole genome shotgun sequence 3,753
JAGNHS010000093.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_103860_length_3654_cov_5.242699, whole genome shotgun sequence 3,654
JAGNHS010000094.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_139242_length_3118_cov_6.157472, whole genome shotgun sequence 3,118
JAGNHS010000095.1 MAG: Proteobacteria bacterium isolate Gw_Eff_bin_446 Gw_Eff_162083_length_2878_cov_6.921483, whole genome shotgun sequence 2,878

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory