fast.genomicscompare 6,575 genera of bacteria & archaea

 

JACDQH01 sp018101195 H1

Genome identifier: GCA_018101195.1

NCBI assembly name: ASM1810119v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rickettsiales, Anaplasmataceae, JACDQH01, JACDQH01 sp018101195

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rickettsiales, Rickettsiaceae

Scaffolds: 5

Genes: 1,144 Protein-coding: 1,098 RNAs: 41 pseudogenes: 5

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JACDQH010000001.1 MAG: Rickettsiaceae bacterium H1 Scaffold_1, whole genome shotgun sequence 378,936
JACDQH010000002.1 MAG: Rickettsiaceae bacterium H1 Scaffold_2, whole genome shotgun sequence 303,435
JACDQH010000003.1 MAG: Rickettsiaceae bacterium H1 Scaffold_3, whole genome shotgun sequence 237,397
JACDQH010000004.1 MAG: Rickettsiaceae bacterium H1 Scaffold_4, whole genome shotgun sequence 184,590
JACDQH010000005.1 MAG: Rickettsiaceae bacterium H1 Scaffold_5, whole genome shotgun sequence 13,849

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory