fast.genomicscompare 6,575 genera of bacteria & archaea

 

UBA10219 sp10219u RIFCSPLOWO2_01_FULL_58_19

Genome identifier: GCA_018304425.1

NCBI assembly name: ASM1830442v1

GTDB taxonomy: Archaea, Iainarchaeota, Iainarchaeia, Iainarchaeales, UBA10219, UBA10219, UBA10219 sp10219u

NCBI taxonomy: Archaea, Candidatus Diapherotrites

Scaffolds: 7

Genes: 1,643 Protein-coding: 1,586 RNAs: 53 pseudogenes: 4

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAGVWE010000001.1 Candidatus Diapherotrites archaeon isolate RIFCSPLOWO2_01_FULL_58_19 rifcsplowo2_01_scaffold_13619, whole genome shotgun sequence 11,565
JAGVWE010000002.1 Candidatus Diapherotrites archaeon isolate RIFCSPLOWO2_01_FULL_58_19 rifcsplowo2_01_scaffold_11, whole genome shotgun sequence 502,436
JAGVWE010000003.1 Candidatus Diapherotrites archaeon isolate RIFCSPLOWO2_01_FULL_58_19 rifcsplowo2_01_scaffold_43, whole genome shotgun sequence 202,412
JAGVWE010000004.1 Candidatus Diapherotrites archaeon isolate RIFCSPLOWO2_01_FULL_58_19 rifcsplowo2_01_scaffold_173, whole genome shotgun sequence 318,120
JAGVWE010000005.1 Candidatus Diapherotrites archaeon isolate RIFCSPLOWO2_01_FULL_58_19 rifcsplowo2_01_scaffold_224, whole genome shotgun sequence 217,533
JAGVWE010000006.1 Candidatus Diapherotrites archaeon isolate RIFCSPLOWO2_01_FULL_58_19 rifcsplowo2_01_scaffold_761, whole genome shotgun sequence 135,280
JAGVWE010000007.1 Candidatus Diapherotrites archaeon isolate RIFCSPLOWO2_01_FULL_58_19 rifcsplowo2_01_scaffold_906, whole genome shotgun sequence 89,803

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory