fast.genomicscompare 6,575 genera of bacteria & archaea

 

CAG-349 sp003539515 L3_098_004G1_dasL3_098_004G1_concoct_116

Genome identifier: GCA_018371695.1

NCBI assembly name: ASM1837169v1

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Christensenellales, CAG-917, CAG-349, CAG-349 sp003539515

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Clostridiaceae, Clostridium

Scaffolds: 20

Genes: 1,423 Protein-coding: 1,361 RNAs: 52 pseudogenes: 10

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAHAKJ010000001.1 MAG: Clostridium sp. isolate L3_098_004G1_dasL3_098_004G1_concoct_116 L3_098_004G1_scaffold_9, whole genome shotgun sequence 275,463
JAHAKJ010000002.1 MAG: Clostridium sp. isolate L3_098_004G1_dasL3_098_004G1_concoct_116 L3_098_004G1_scaffold_39, whole genome shotgun sequence 240,952
JAHAKJ010000003.1 MAG: Clostridium sp. isolate L3_098_004G1_dasL3_098_004G1_concoct_116 L3_098_004G1_scaffold_45, whole genome shotgun sequence 121,868
JAHAKJ010000004.1 MAG: Clostridium sp. isolate L3_098_004G1_dasL3_098_004G1_concoct_116 L3_098_004G1_scaffold_52, whole genome shotgun sequence 156,419
JAHAKJ010000005.1 MAG: Clostridium sp. isolate L3_098_004G1_dasL3_098_004G1_concoct_116 L3_098_004G1_scaffold_59, whole genome shotgun sequence 102,603
JAHAKJ010000006.1 MAG: Clostridium sp. isolate L3_098_004G1_dasL3_098_004G1_concoct_116 L3_098_004G1_scaffold_110, whole genome shotgun sequence 76,294
JAHAKJ010000007.1 MAG: Clostridium sp. isolate L3_098_004G1_dasL3_098_004G1_concoct_116 L3_098_004G1_scaffold_150, whole genome shotgun sequence 66,841
JAHAKJ010000008.1 MAG: Clostridium sp. isolate L3_098_004G1_dasL3_098_004G1_concoct_116 L3_098_004G1_scaffold_153, whole genome shotgun sequence 119,841
JAHAKJ010000009.1 MAG: Clostridium sp. isolate L3_098_004G1_dasL3_098_004G1_concoct_116 L3_098_004G1_scaffold_232, whole genome shotgun sequence 69,358
JAHAKJ010000010.1 MAG: Clostridium sp. isolate L3_098_004G1_dasL3_098_004G1_concoct_116 L3_098_004G1_scaffold_355, whole genome shotgun sequence 41,203
JAHAKJ010000011.1 MAG: Clostridium sp. isolate L3_098_004G1_dasL3_098_004G1_concoct_116 L3_098_004G1_scaffold_421, whole genome shotgun sequence 41,574
JAHAKJ010000012.1 MAG: Clostridium sp. isolate L3_098_004G1_dasL3_098_004G1_concoct_116 L3_098_004G1_scaffold_476, whole genome shotgun sequence 34,571
JAHAKJ010000013.1 MAG: Clostridium sp. isolate L3_098_004G1_dasL3_098_004G1_concoct_116 L3_098_004G1_scaffold_601, whole genome shotgun sequence 29,356
JAHAKJ010000014.1 MAG: Clostridium sp. isolate L3_098_004G1_dasL3_098_004G1_concoct_116 L3_098_004G1_scaffold_625, whole genome shotgun sequence 54,090
JAHAKJ010000015.1 MAG: Clostridium sp. isolate L3_098_004G1_dasL3_098_004G1_concoct_116 L3_098_004G1_scaffold_1270, whole genome shotgun sequence 17,818
JAHAKJ010000016.1 MAG: Clostridium sp. isolate L3_098_004G1_dasL3_098_004G1_concoct_116 L3_098_004G1_scaffold_1346, whole genome shotgun sequence 24,478
JAHAKJ010000017.1 MAG: Clostridium sp. isolate L3_098_004G1_dasL3_098_004G1_concoct_116 L3_098_004G1_scaffold_1402, whole genome shotgun sequence 16,676
JAHAKJ010000018.1 MAG: Clostridium sp. isolate L3_098_004G1_dasL3_098_004G1_concoct_116 L3_098_004G1_scaffold_1876, whole genome shotgun sequence 17,069
JAHAKJ010000019.1 MAG: Clostridium sp. isolate L3_098_004G1_dasL3_098_004G1_concoct_116 L3_098_004G1_scaffold_4470, whole genome shotgun sequence 7,579
JAHAKJ010000020.1 MAG: Clostridium sp. isolate L3_098_004G1_dasL3_098_004G1_concoct_116 L3_098_004G1_scaffold_4949, whole genome shotgun sequence 9,627

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory