fast.genomicscompare 6,575 genera of bacteria & archaea

 

TNE-4 sp019083985 TNE-4

Genome identifier: GCA_019083985.1

NCBI assembly name: ASM1908398v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Beijerinckiaceae, TNE-4, TNE-4 sp019083985

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales

Scaffolds: 17

Genes: 3,091 Protein-coding: 3,024 RNAs: 57 pseudogenes: 10

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAHRCV010000001.1 Rhizobiales bacterium TNE-4 contig00001, whole genome shotgun sequence 1,627,541
JAHRCV010000002.1 Rhizobiales bacterium TNE-4 contig00002, whole genome shotgun sequence 632,184
JAHRCV010000003.1 Rhizobiales bacterium TNE-4 contig00003, whole genome shotgun sequence 454,817
JAHRCV010000004.1 Rhizobiales bacterium TNE-4 contig00004, whole genome shotgun sequence 206,757
JAHRCV010000005.1 Rhizobiales bacterium TNE-4 contig00005, whole genome shotgun sequence 147,964
JAHRCV010000006.1 Rhizobiales bacterium TNE-4 contig00006, whole genome shotgun sequence 41,798
JAHRCV010000007.1 Rhizobiales bacterium TNE-4 contig00007, whole genome shotgun sequence 17,045
JAHRCV010000008.1 Rhizobiales bacterium TNE-4 contig00008, whole genome shotgun sequence 15,157
JAHRCV010000009.1 Rhizobiales bacterium TNE-4 contig00009, whole genome shotgun sequence 12,103
JAHRCV010000010.1 Rhizobiales bacterium TNE-4 contig00010, whole genome shotgun sequence 10,512
JAHRCV010000011.1 Rhizobiales bacterium TNE-4 contig00011, whole genome shotgun sequence 1,557
JAHRCV010000012.1 Rhizobiales bacterium TNE-4 contig00012, whole genome shotgun sequence 1,268
JAHRCV010000013.1 Rhizobiales bacterium TNE-4 contig00013, whole genome shotgun sequence 1,142
JAHRCV010000014.1 Rhizobiales bacterium TNE-4 contig00014, whole genome shotgun sequence 854
JAHRCV010000015.1 Rhizobiales bacterium TNE-4 contig00015, whole genome shotgun sequence 668
JAHRCV010000016.1 Rhizobiales bacterium TNE-4 contig00016, whole genome shotgun sequence 530
JAHRCV010000017.1 Rhizobiales bacterium TNE-4 contig00017, whole genome shotgun sequence 262

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory