fast.genomicscompare 6,575 genera of bacteria & archaea

 

TMED2 sp019192455 SS10

Genome identifier: GCA_019192455.1

NCBI assembly name: ASM1919245v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, TMED2, TMED2, TMED2, TMED2 sp019192455

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria

Scaffolds: 16

Genes: 2,941 Protein-coding: 2,884 RNAs: 47 pseudogenes: 10

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAHCML010000001.1 MAG: Alphaproteobacteria bacterium SS10 subsampled-bin-10_0, whole genome shotgun sequence 44,709
JAHCML010000002.1 MAG: Alphaproteobacteria bacterium SS10 subsampled-bin-10_1, whole genome shotgun sequence 71,445
JAHCML010000003.1 MAG: Alphaproteobacteria bacterium SS10 subsampled-bin-10_2, whole genome shotgun sequence 1,555,694
JAHCML010000004.1 MAG: Alphaproteobacteria bacterium SS10 subsampled-bin-10_3, whole genome shotgun sequence 298,093
JAHCML010000005.1 MAG: Alphaproteobacteria bacterium SS10 subsampled-bin-10_4, whole genome shotgun sequence 238,431
JAHCML010000006.1 MAG: Alphaproteobacteria bacterium SS10 subsampled-bin-10_5, whole genome shotgun sequence 457,662
JAHCML010000007.1 MAG: Alphaproteobacteria bacterium SS10 subsampled-bin-10_6, whole genome shotgun sequence 201,205
JAHCML010000008.1 MAG: Alphaproteobacteria bacterium SS10 subsampled-bin-10_7, whole genome shotgun sequence 66,462
JAHCML010000009.1 MAG: Alphaproteobacteria bacterium SS10 subsampled-bin-10_8, whole genome shotgun sequence 202,264
JAHCML010000010.1 MAG: Alphaproteobacteria bacterium SS10 subsampled-bin-10_9, whole genome shotgun sequence 5,735
JAHCML010000011.1 MAG: Alphaproteobacteria bacterium SS10 subsampled-bin-10_10, whole genome shotgun sequence 8,792
JAHCML010000012.1 MAG: Alphaproteobacteria bacterium SS10 subsampled-bin-10_11, whole genome shotgun sequence 2,088
JAHCML010000013.1 MAG: Alphaproteobacteria bacterium SS10 subsampled-bin-10_12, whole genome shotgun sequence 6,297
JAHCML010000014.1 MAG: Alphaproteobacteria bacterium SS10 subsampled-bin-10_13, whole genome shotgun sequence 10,377
JAHCML010000015.1 MAG: Alphaproteobacteria bacterium SS10 subsampled-bin-10_14, whole genome shotgun sequence 3,650
JAHCML010000016.1 MAG: Alphaproteobacteria bacterium SS10 subsampled-bin-10_15, whole genome shotgun sequence 13,653

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory