fast.genomicscompare 6,575 genera of bacteria & archaea

 

AG-422-B15 sp902588785 CM1_5m.P16

Genome identifier: GCA_019649495.1

NCBI assembly name: ASM1964949v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Pelagibacterales, AG-422-B15, AG-422-B15, AG-422-B15 sp902588785

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Candidatus Pelagibacterales

Scaffolds: 4

Genes: 1,456 Protein-coding: 1,421 RNAs: 35 pseudogenes: 0

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
BOWG01000001.1 MAG: Pelagibacterales bacterium CM1_5m.P16 DNA, sequence1, whole genome shotgun sequence 553,888
BOWG01000002.1 MAG: Pelagibacterales bacterium CM1_5m.P16 DNA, sequence2, whole genome shotgun sequence 453,611
BOWG01000003.1 MAG: Pelagibacterales bacterium CM1_5m.P16 DNA, sequence3, whole genome shotgun sequence 169,732
BOWG01000004.1 MAG: Pelagibacterales bacterium CM1_5m.P16 DNA, sequence4, whole genome shotgun sequence 154,538

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory