fast.genomicscompare 6,575 genera of bacteria & archaea

 

JABFQO01 sp019685575 A05DMB-4

Genome identifier: GCA_019685575.1

NCBI assembly name: ASM1968557v1

GTDB taxonomy: Archaea, Thermoproteota, Bathyarchaeia, Bathyarchaeales, SOJC01, JABFQO01, JABFQO01 sp019685575

NCBI taxonomy: Archaea, Candidatus Bathyarchaeota

Scaffolds: 20

Genes: 1,691 Protein-coding: 1,633 RNAs: 51 pseudogenes: 7

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JABFQO010000001.1 Candidatus Bathyarchaeota archaeon A05DMB-4 NODE_54_length_184158_cov_20.176999, whole genome shotgun sequence 184,158
JABFQO010000002.1 Candidatus Bathyarchaeota archaeon A05DMB-4 NODE_57_length_179447_cov_19.307544, whole genome shotgun sequence 179,447
JABFQO010000003.1 Candidatus Bathyarchaeota archaeon A05DMB-4 NODE_74_length_154543_cov_20.516875, whole genome shotgun sequence 154,543
JABFQO010000004.1 Candidatus Bathyarchaeota archaeon A05DMB-4 NODE_102_length_130926_cov_19.266071, whole genome shotgun sequence 130,926
JABFQO010000005.1 Candidatus Bathyarchaeota archaeon A05DMB-4 NODE_106_length_129094_cov_20.643333, whole genome shotgun sequence 129,094
JABFQO010000006.1 Candidatus Bathyarchaeota archaeon A05DMB-4 NODE_164_length_93601_cov_21.380444, whole genome shotgun sequence 93,601
JABFQO010000007.1 Candidatus Bathyarchaeota archaeon A05DMB-4 NODE_171_length_89670_cov_20.936216, whole genome shotgun sequence 89,670
JABFQO010000008.1 Candidatus Bathyarchaeota archaeon A05DMB-4 NODE_172_length_89542_cov_19.865891, whole genome shotgun sequence 89,542
JABFQO010000009.1 Candidatus Bathyarchaeota archaeon A05DMB-4 NODE_217_length_71692_cov_16.935438, whole genome shotgun sequence 71,692
JABFQO010000010.1 Candidatus Bathyarchaeota archaeon A05DMB-4 NODE_241_length_65111_cov_19.696892, whole genome shotgun sequence 65,111
JABFQO010000011.1 Candidatus Bathyarchaeota archaeon A05DMB-4 NODE_282_length_56875_cov_20.574551, whole genome shotgun sequence 56,875
JABFQO010000012.1 Candidatus Bathyarchaeota archaeon A05DMB-4 NODE_285_length_56389_cov_18.743760, whole genome shotgun sequence 56,389
JABFQO010000013.1 Candidatus Bathyarchaeota archaeon A05DMB-4 NODE_306_length_52623_cov_20.413636, whole genome shotgun sequence 52,623
JABFQO010000014.1 Candidatus Bathyarchaeota archaeon A05DMB-4 NODE_341_length_47327_cov_19.895329, whole genome shotgun sequence 47,327
JABFQO010000015.1 Candidatus Bathyarchaeota archaeon A05DMB-4 NODE_347_length_46765_cov_19.172854, whole genome shotgun sequence 46,765
JABFQO010000016.1 Candidatus Bathyarchaeota archaeon A05DMB-4 NODE_465_length_34558_cov_18.563719, whole genome shotgun sequence 34,558
JABFQO010000017.1 Candidatus Bathyarchaeota archaeon A05DMB-4 NODE_564_length_28369_cov_18.145723, whole genome shotgun sequence 28,369
JABFQO010000018.1 Candidatus Bathyarchaeota archaeon A05DMB-4 NODE_1749_length_9743_cov_19.702312, whole genome shotgun sequence 9,743
JABFQO010000019.1 Candidatus Bathyarchaeota archaeon A05DMB-4 NODE_3264_length_5607_cov_20.105367, whole genome shotgun sequence 5,607
JABFQO010000020.1 Candidatus Bathyarchaeota archaeon A05DMB-4 NODE_5296_length_3576_cov_19.182903, whole genome shotgun sequence 3,576

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory