fast.genomicscompare 6,575 genera of bacteria & archaea

 

JADGHE01 sp019689555 HOG14

Genome identifier: GCA_019689555.1

NCBI assembly name: ASM1968955v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Xanthobacteraceae, JADGHE01, JADGHE01 sp019689555

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Nitrobacteraceae, Variibacter

Scaffolds: 108

Genes: 3,078 Protein-coding: 2,989 RNAs: 52 pseudogenes: 37

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JADGHE010000001.1 MAG: Variibacter sp. isolate HOG14 NODE_6_length_163156_cov_68.501230, whole genome shotgun sequence 163,156
JADGHE010000002.1 MAG: Variibacter sp. isolate HOG14 NODE_11_length_123516_cov_66.030514, whole genome shotgun sequence 123,516
JADGHE010000003.1 MAG: Variibacter sp. isolate HOG14 NODE_35_length_90013_cov_68.719766, whole genome shotgun sequence 90,013
JADGHE010000004.1 MAG: Variibacter sp. isolate HOG14 NODE_36_length_89973_cov_65.155362, whole genome shotgun sequence 89,973
JADGHE010000005.1 MAG: Variibacter sp. isolate HOG14 NODE_38_length_89132_cov_59.370189, whole genome shotgun sequence 89,132
JADGHE010000006.1 MAG: Variibacter sp. isolate HOG14 NODE_45_length_86522_cov_63.940514, whole genome shotgun sequence 86,522
JADGHE010000007.1 MAG: Variibacter sp. isolate HOG14 NODE_56_length_81361_cov_60.586080, whole genome shotgun sequence 81,361
JADGHE010000008.1 MAG: Variibacter sp. isolate HOG14 NODE_58_length_80724_cov_68.774722, whole genome shotgun sequence 80,724
JADGHE010000009.1 MAG: Variibacter sp. isolate HOG14 NODE_62_length_78747_cov_61.176508, whole genome shotgun sequence 78,747
JADGHE010000010.1 MAG: Variibacter sp. isolate HOG14 NODE_65_length_77372_cov_63.274805, whole genome shotgun sequence 77,372
JADGHE010000011.1 MAG: Variibacter sp. isolate HOG14 NODE_66_length_76638_cov_64.238950, whole genome shotgun sequence 76,638
JADGHE010000012.1 MAG: Variibacter sp. isolate HOG14 NODE_90_length_70055_cov_65.692264, whole genome shotgun sequence 70,055
JADGHE010000013.1 MAG: Variibacter sp. isolate HOG14 NODE_96_length_69026_cov_64.028204, whole genome shotgun sequence 69,026
JADGHE010000014.1 MAG: Variibacter sp. isolate HOG14 NODE_99_length_67714_cov_66.279006, whole genome shotgun sequence 67,714
JADGHE010000015.1 MAG: Variibacter sp. isolate HOG14 NODE_105_length_66244_cov_66.435029, whole genome shotgun sequence 66,244
JADGHE010000016.1 MAG: Variibacter sp. isolate HOG14 NODE_118_length_62727_cov_61.357715, whole genome shotgun sequence 62,727
JADGHE010000017.1 MAG: Variibacter sp. isolate HOG14 NODE_127_length_60758_cov_71.781698, whole genome shotgun sequence 60,758
JADGHE010000018.1 MAG: Variibacter sp. isolate HOG14 NODE_177_length_54402_cov_54.318564, whole genome shotgun sequence 54,402
JADGHE010000019.1 MAG: Variibacter sp. isolate HOG14 NODE_181_length_53150_cov_65.028180, whole genome shotgun sequence 53,150
JADGHE010000020.1 MAG: Variibacter sp. isolate HOG14 NODE_183_length_52789_cov_67.718675, whole genome shotgun sequence 52,789
JADGHE010000021.1 MAG: Variibacter sp. isolate HOG14 NODE_217_length_48890_cov_57.278801, whole genome shotgun sequence 48,890
JADGHE010000022.1 MAG: Variibacter sp. isolate HOG14 NODE_227_length_48230_cov_55.336665, whole genome shotgun sequence 48,230
JADGHE010000023.1 MAG: Variibacter sp. isolate HOG14 NODE_245_length_46755_cov_64.405457, whole genome shotgun sequence 46,755
JADGHE010000024.1 MAG: Variibacter sp. isolate HOG14 NODE_276_length_44929_cov_65.884698, whole genome shotgun sequence 44,929
JADGHE010000025.1 MAG: Variibacter sp. isolate HOG14 NODE_302_length_43229_cov_67.466659, whole genome shotgun sequence 43,229
JADGHE010000026.1 MAG: Variibacter sp. isolate HOG14 NODE_344_length_40734_cov_66.969804, whole genome shotgun sequence 40,734
JADGHE010000027.1 MAG: Variibacter sp. isolate HOG14 NODE_355_length_40278_cov_69.665671, whole genome shotgun sequence 40,278
JADGHE010000028.1 MAG: Variibacter sp. isolate HOG14 NODE_382_length_39356_cov_63.968159, whole genome shotgun sequence 39,356
JADGHE010000029.1 MAG: Variibacter sp. isolate HOG14 NODE_398_length_38662_cov_67.606151, whole genome shotgun sequence 38,662
JADGHE010000030.1 MAG: Variibacter sp. isolate HOG14 NODE_421_length_37285_cov_59.879148, whole genome shotgun sequence 37,285
JADGHE010000031.1 MAG: Variibacter sp. isolate HOG14 NODE_443_length_36468_cov_60.876103, whole genome shotgun sequence 36,468
JADGHE010000032.1 MAG: Variibacter sp. isolate HOG14 NODE_445_length_36431_cov_66.730155, whole genome shotgun sequence 36,431
JADGHE010000033.1 MAG: Variibacter sp. isolate HOG14 NODE_446_length_36379_cov_63.874201, whole genome shotgun sequence 36,379
JADGHE010000034.1 MAG: Variibacter sp. isolate HOG14 NODE_450_length_36208_cov_65.384419, whole genome shotgun sequence 36,208
JADGHE010000035.1 MAG: Variibacter sp. isolate HOG14 NODE_455_length_36123_cov_62.935154, whole genome shotgun sequence 36,123
JADGHE010000036.1 MAG: Variibacter sp. isolate HOG14 NODE_483_length_35230_cov_64.365261, whole genome shotgun sequence 35,230
JADGHE010000037.1 MAG: Variibacter sp. isolate HOG14 NODE_501_length_34395_cov_62.795545, whole genome shotgun sequence 34,395
JADGHE010000038.1 MAG: Variibacter sp. isolate HOG14 NODE_506_length_34219_cov_69.124883, whole genome shotgun sequence 34,219
JADGHE010000039.1 MAG: Variibacter sp. isolate HOG14 NODE_560_length_32946_cov_63.339757, whole genome shotgun sequence 32,946
JADGHE010000040.1 MAG: Variibacter sp. isolate HOG14 NODE_583_length_32313_cov_65.870584, whole genome shotgun sequence 32,313
JADGHE010000041.1 MAG: Variibacter sp. isolate HOG14 NODE_585_length_32289_cov_65.826033, whole genome shotgun sequence 32,289
JADGHE010000042.1 MAG: Variibacter sp. isolate HOG14 NODE_638_length_31085_cov_67.124734, whole genome shotgun sequence 31,085
JADGHE010000043.1 MAG: Variibacter sp. isolate HOG14 NODE_651_length_30946_cov_67.425422, whole genome shotgun sequence 30,946
JADGHE010000044.1 MAG: Variibacter sp. isolate HOG14 NODE_676_length_30493_cov_68.668520, whole genome shotgun sequence 30,493
JADGHE010000045.1 MAG: Variibacter sp. isolate HOG14 NODE_766_length_28547_cov_61.600077, whole genome shotgun sequence 28,547
JADGHE010000046.1 MAG: Variibacter sp. isolate HOG14 NODE_832_length_27530_cov_70.299005, whole genome shotgun sequence 27,530
JADGHE010000047.1 MAG: Variibacter sp. isolate HOG14 NODE_861_length_26990_cov_64.968577, whole genome shotgun sequence 26,990
JADGHE010000048.1 MAG: Variibacter sp. isolate HOG14 NODE_882_length_26684_cov_60.107203, whole genome shotgun sequence 26,684
JADGHE010000049.1 MAG: Variibacter sp. isolate HOG14 NODE_934_length_26004_cov_65.081529, whole genome shotgun sequence 26,004
JADGHE010000050.1 MAG: Variibacter sp. isolate HOG14 NODE_978_length_25386_cov_71.502116, whole genome shotgun sequence 25,386
JADGHE010000051.1 MAG: Variibacter sp. isolate HOG14 NODE_989_length_25179_cov_59.518301, whole genome shotgun sequence 25,179
JADGHE010000052.1 MAG: Variibacter sp. isolate HOG14 NODE_1105_length_23631_cov_63.003782, whole genome shotgun sequence 23,631
JADGHE010000053.1 MAG: Variibacter sp. isolate HOG14 NODE_1207_length_22598_cov_68.536291, whole genome shotgun sequence 22,598
JADGHE010000054.1 MAG: Variibacter sp. isolate HOG14 NODE_1234_length_22351_cov_69.223396, whole genome shotgun sequence 22,351
JADGHE010000055.1 MAG: Variibacter sp. isolate HOG14 NODE_1254_length_22076_cov_63.021386, whole genome shotgun sequence 22,076
JADGHE010000056.1 MAG: Variibacter sp. isolate HOG14 NODE_1264_length_21974_cov_70.582491, whole genome shotgun sequence 21,974
JADGHE010000057.1 MAG: Variibacter sp. isolate HOG14 NODE_1291_length_21648_cov_62.055919, whole genome shotgun sequence 21,648
JADGHE010000058.1 MAG: Variibacter sp. isolate HOG14 NODE_1465_length_20236_cov_59.248994, whole genome shotgun sequence 20,236
JADGHE010000059.1 MAG: Variibacter sp. isolate HOG14 NODE_1643_length_19117_cov_66.670891, whole genome shotgun sequence 19,117
JADGHE010000060.1 MAG: Variibacter sp. isolate HOG14 NODE_1875_length_17661_cov_66.385093, whole genome shotgun sequence 17,661
JADGHE010000061.1 MAG: Variibacter sp. isolate HOG14 NODE_1919_length_17479_cov_62.260702, whole genome shotgun sequence 17,479
JADGHE010000062.1 MAG: Variibacter sp. isolate HOG14 NODE_2225_length_16104_cov_71.384130, whole genome shotgun sequence 16,104
JADGHE010000063.1 MAG: Variibacter sp. isolate HOG14 NODE_2388_length_15444_cov_62.623591, whole genome shotgun sequence 15,444
JADGHE010000064.1 MAG: Variibacter sp. isolate HOG14 NODE_2522_length_14935_cov_63.238609, whole genome shotgun sequence 14,935
JADGHE010000065.1 MAG: Variibacter sp. isolate HOG14 NODE_2607_length_14620_cov_62.085600, whole genome shotgun sequence 14,620
JADGHE010000066.1 MAG: Variibacter sp. isolate HOG14 NODE_2650_length_14486_cov_55.247446, whole genome shotgun sequence 14,486
JADGHE010000067.1 MAG: Variibacter sp. isolate HOG14 NODE_2673_length_14434_cov_65.540356, whole genome shotgun sequence 14,434
JADGHE010000068.1 MAG: Variibacter sp. isolate HOG14 NODE_2726_length_14253_cov_67.390844, whole genome shotgun sequence 14,253
JADGHE010000069.1 MAG: Variibacter sp. isolate HOG14 NODE_2847_length_13864_cov_57.898583, whole genome shotgun sequence 13,864
JADGHE010000070.1 MAG: Variibacter sp. isolate HOG14 NODE_2912_length_13691_cov_61.769276, whole genome shotgun sequence 13,691
JADGHE010000071.1 MAG: Variibacter sp. isolate HOG14 NODE_2921_length_13673_cov_66.008619, whole genome shotgun sequence 13,673
JADGHE010000072.1 MAG: Variibacter sp. isolate HOG14 NODE_3238_length_12816_cov_60.669419, whole genome shotgun sequence 12,816
JADGHE010000073.1 MAG: Variibacter sp. isolate HOG14 NODE_3240_length_12812_cov_61.378746, whole genome shotgun sequence 12,812
JADGHE010000074.1 MAG: Variibacter sp. isolate HOG14 NODE_3526_length_12163_cov_64.966346, whole genome shotgun sequence 12,163
JADGHE010000075.1 MAG: Variibacter sp. isolate HOG14 NODE_3657_length_11885_cov_61.561174, whole genome shotgun sequence 11,885
JADGHE010000076.1 MAG: Variibacter sp. isolate HOG14 NODE_3904_length_11387_cov_60.498760, whole genome shotgun sequence 11,387
JADGHE010000077.1 MAG: Variibacter sp. isolate HOG14 NODE_4031_length_11104_cov_67.053612, whole genome shotgun sequence 11,104
JADGHE010000078.1 MAG: Variibacter sp. isolate HOG14 NODE_4116_length_10950_cov_56.729979, whole genome shotgun sequence 10,950
JADGHE010000079.1 MAG: Variibacter sp. isolate HOG14 NODE_4450_length_10349_cov_69.113268, whole genome shotgun sequence 10,349
JADGHE010000080.1 MAG: Variibacter sp. isolate HOG14 NODE_4474_length_10317_cov_64.372284, whole genome shotgun sequence 10,317
JADGHE010000081.1 MAG: Variibacter sp. isolate HOG14 NODE_4514_length_10237_cov_60.788716, whole genome shotgun sequence 10,237
JADGHE010000082.1 MAG: Variibacter sp. isolate HOG14 NODE_4615_length_10093_cov_71.205523, whole genome shotgun sequence 10,093
JADGHE010000083.1 MAG: Variibacter sp. isolate HOG14 NODE_4917_length_9629_cov_58.550367, whole genome shotgun sequence 9,629
JADGHE010000084.1 MAG: Variibacter sp. isolate HOG14 NODE_5231_length_9164_cov_82.912852, whole genome shotgun sequence 9,164
JADGHE010000085.1 MAG: Variibacter sp. isolate HOG14 NODE_5400_length_8968_cov_61.378735, whole genome shotgun sequence 8,968
JADGHE010000086.1 MAG: Variibacter sp. isolate HOG14 NODE_5407_length_8961_cov_60.622546, whole genome shotgun sequence 8,961
JADGHE010000087.1 MAG: Variibacter sp. isolate HOG14 NODE_5993_length_8329_cov_63.392710, whole genome shotgun sequence 8,329
JADGHE010000088.1 MAG: Variibacter sp. isolate HOG14 NODE_6546_length_7777_cov_59.827169, whole genome shotgun sequence 7,777
JADGHE010000089.1 MAG: Variibacter sp. isolate HOG14 NODE_6748_length_7587_cov_67.247196, whole genome shotgun sequence 7,587
JADGHE010000090.1 MAG: Variibacter sp. isolate HOG14 NODE_7045_length_7350_cov_63.520066, whole genome shotgun sequence 7,350
JADGHE010000091.1 MAG: Variibacter sp. isolate HOG14 NODE_7605_length_6923_cov_70.575762, whole genome shotgun sequence 6,923
JADGHE010000092.1 MAG: Variibacter sp. isolate HOG14 NODE_9335_length_5866_cov_60.885036, whole genome shotgun sequence 5,866
JADGHE010000093.1 MAG: Variibacter sp. isolate HOG14 NODE_9440_length_5808_cov_62.020319, whole genome shotgun sequence 5,808
JADGHE010000094.1 MAG: Variibacter sp. isolate HOG14 NODE_10319_length_5375_cov_55.211145, whole genome shotgun sequence 5,375
JADGHE010000095.1 MAG: Variibacter sp. isolate HOG14 NODE_10472_length_5310_cov_56.988678, whole genome shotgun sequence 5,310
JADGHE010000096.1 MAG: Variibacter sp. isolate HOG14 NODE_11118_length_5041_cov_66.150142, whole genome shotgun sequence 5,041
JADGHE010000097.1 MAG: Variibacter sp. isolate HOG14 NODE_11270_length_4973_cov_25.657776, whole genome shotgun sequence 4,973
JADGHE010000098.1 MAG: Variibacter sp. isolate HOG14 NODE_11479_length_4891_cov_63.411519, whole genome shotgun sequence 4,891
JADGHE010000099.1 MAG: Variibacter sp. isolate HOG14 NODE_13088_length_4305_cov_64.514028, whole genome shotgun sequence 4,305
JADGHE010000100.1 MAG: Variibacter sp. isolate HOG14 NODE_13867_length_4081_cov_74.494726, whole genome shotgun sequence 4,081
JADGHE010000101.1 MAG: Variibacter sp. isolate HOG14 NODE_13870_length_4080_cov_74.101733, whole genome shotgun sequence 4,080
JADGHE010000102.1 MAG: Variibacter sp. isolate HOG14 NODE_14142_length_4004_cov_72.505250, whole genome shotgun sequence 4,004
JADGHE010000103.1 MAG: Variibacter sp. isolate HOG14 NODE_14549_length_3891_cov_59.284810, whole genome shotgun sequence 3,891
JADGHE010000104.1 MAG: Variibacter sp. isolate HOG14 NODE_14755_length_3842_cov_57.559711, whole genome shotgun sequence 3,842
JADGHE010000105.1 MAG: Variibacter sp. isolate HOG14 NODE_14985_length_3785_cov_56.837493, whole genome shotgun sequence 3,785
JADGHE010000106.1 MAG: Variibacter sp. isolate HOG14 NODE_15301_length_3708_cov_54.654475, whole genome shotgun sequence 3,708
JADGHE010000107.1 MAG: Variibacter sp. isolate HOG14 NODE_23765_length_2395_cov_59.544861, whole genome shotgun sequence 2,395
JADGHE010000108.1 MAG: Variibacter sp. isolate HOG14 NODE_27843_length_2043_cov_50.155350, whole genome shotgun sequence 2,043

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory