fast.genomicscompare 6,575 genera of bacteria & archaea

 

JAIBCM01 sp019694135 SSF49

Genome identifier: GCA_019694135.1

NCBI assembly name: ASM1969413v1

GTDB taxonomy: Bacteria, Verrucomicrobiota, Verrucomicrobiae, JADLBR01, JAIBCM01, JAIBCM01, JAIBCM01 sp019694135

NCBI taxonomy: Bacteria, Verrucomicrobiota, Verrucomicrobiae

Scaffolds: 9

Genes: 1,948 Protein-coding: 1,896 RNAs: 51 pseudogenes: 1

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAIBCM010000001.1 MAG: Verrucomicrobiae bacterium isolate SSF49 NODE_64_length_507931_cov_16.975112, whole genome shotgun sequence 507,931
JAIBCM010000002.1 MAG: Verrucomicrobiae bacterium isolate SSF49 NODE_74_length_480260_cov_16.929990, whole genome shotgun sequence 480,260
JAIBCM010000003.1 MAG: Verrucomicrobiae bacterium isolate SSF49 NODE_121_length_405029_cov_15.568463, whole genome shotgun sequence 405,029
JAIBCM010000004.1 MAG: Verrucomicrobiae bacterium isolate SSF49 NODE_345_length_275603_cov_16.452584, whole genome shotgun sequence 275,603
JAIBCM010000005.1 MAG: Verrucomicrobiae bacterium isolate SSF49 NODE_1212_length_159551_cov_18.417810, whole genome shotgun sequence 159,551
JAIBCM010000006.1 MAG: Verrucomicrobiae bacterium isolate SSF49 NODE_2536_length_113604_cov_19.177199, whole genome shotgun sequence 113,604
JAIBCM010000007.1 MAG: Verrucomicrobiae bacterium isolate SSF49 NODE_5516_length_77716_cov_17.821869, whole genome shotgun sequence 77,716
JAIBCM010000008.1 MAG: Verrucomicrobiae bacterium isolate SSF49 NODE_23957_length_33656_cov_17.558024, whole genome shotgun sequence 33,656
JAIBCM010000009.1 MAG: Verrucomicrobiae bacterium isolate SSF49 NODE_174608_length_8661_cov_18.356339, whole genome shotgun sequence 8,661

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory