fast.genomicscompare 6,575 genera of bacteria & archaea

 

REEB52 sp019694475 SSF52

Genome identifier: GCA_019694475.1

NCBI assembly name: ASM1969447v1

GTDB taxonomy: Bacteria, Chlamydiota, Chlamydiia, Chlamydiales, SM23-39, REEB52, REEB52 sp019694475

NCBI taxonomy: Bacteria, Chlamydiota, Chlamydiia, Parachlamydiales

Scaffolds: 10

Genes: 2,202 Protein-coding: 2,155 RNAs: 46 pseudogenes: 1

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAIBBX010000001.1 MAG: Parachlamydiales bacterium isolate SSF52 NODE_45_length_576002_cov_25.423217, whole genome shotgun sequence 576,002
JAIBBX010000002.1 MAG: Parachlamydiales bacterium isolate SSF52 NODE_47_length_571952_cov_25.852332, whole genome shotgun sequence 571,952
JAIBBX010000003.1 MAG: Parachlamydiales bacterium isolate SSF52 NODE_201_length_341382_cov_25.586591, whole genome shotgun sequence 341,382
JAIBBX010000004.1 MAG: Parachlamydiales bacterium isolate SSF52 NODE_220_length_328058_cov_26.133952, whole genome shotgun sequence 328,058
JAIBBX010000005.1 MAG: Parachlamydiales bacterium isolate SSF52 NODE_1177_length_161544_cov_25.696073, whole genome shotgun sequence 161,544
JAIBBX010000006.1 MAG: Parachlamydiales bacterium isolate SSF52 NODE_3849_length_93197_cov_26.071731, whole genome shotgun sequence 93,197
JAIBBX010000007.1 MAG: Parachlamydiales bacterium isolate SSF52 NODE_6188_length_73233_cov_25.810795, whole genome shotgun sequence 73,233
JAIBBX010000008.1 MAG: Parachlamydiales bacterium isolate SSF52 NODE_12508_length_49720_cov_25.514831, whole genome shotgun sequence 49,720
JAIBBX010000009.1 MAG: Parachlamydiales bacterium isolate SSF52 NODE_13435_length_47715_cov_25.406783, whole genome shotgun sequence 47,715
JAIBBX010000010.1 MAG: Parachlamydiales bacterium isolate SSF52 NODE_14403_length_45738_cov_24.595317, whole genome shotgun sequence 45,738

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory