fast.genomicscompare 6,575 genera of bacteria & archaea

 

JAIBAD01 sp019695395 SSF54

Genome identifier: GCA_019695395.1

NCBI assembly name: ASM1969539v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, JAEUKQ01, JAIBAD01, JAIBAD01, JAIBAD01 sp019695395

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria

Scaffolds: 82

Genes: 1,816 Protein-coding: 1,763 RNAs: 43 pseudogenes: 10

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAIBAD010000001.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_2680_length_110845_cov_6.643238, whole genome shotgun sequence 110,845
JAIBAD010000002.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_4307_length_87485_cov_7.170391, whole genome shotgun sequence 87,485
JAIBAD010000003.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_8055_length_63605_cov_6.091796, whole genome shotgun sequence 63,605
JAIBAD010000004.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_8950_length_60238_cov_6.534694, whole genome shotgun sequence 60,238
JAIBAD010000005.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_9454_length_58445_cov_5.507733, whole genome shotgun sequence 58,445
JAIBAD010000006.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_10665_length_54613_cov_7.037037, whole genome shotgun sequence 54,613
JAIBAD010000007.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_10681_length_54574_cov_6.383694, whole genome shotgun sequence 54,574
JAIBAD010000008.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_11908_length_51235_cov_5.890996, whole genome shotgun sequence 51,235
JAIBAD010000009.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_13729_length_47071_cov_5.756071, whole genome shotgun sequence 47,071
JAIBAD010000010.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_13841_length_46873_cov_5.657596, whole genome shotgun sequence 46,873
JAIBAD010000011.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_15383_length_43971_cov_6.221034, whole genome shotgun sequence 43,971
JAIBAD010000012.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_16081_length_42787_cov_6.483919, whole genome shotgun sequence 42,787
JAIBAD010000013.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_16220_length_42588_cov_5.690869, whole genome shotgun sequence 42,588
JAIBAD010000014.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_17925_length_40124_cov_6.423707, whole genome shotgun sequence 40,124
JAIBAD010000015.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_18972_length_38822_cov_5.609278, whole genome shotgun sequence 38,822
JAIBAD010000016.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_19585_length_38065_cov_6.500633, whole genome shotgun sequence 38,065
JAIBAD010000017.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_20451_length_37062_cov_5.323244, whole genome shotgun sequence 37,062
JAIBAD010000018.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_21042_length_36437_cov_6.084798, whole genome shotgun sequence 36,437
JAIBAD010000019.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_21348_length_36124_cov_7.274634, whole genome shotgun sequence 36,124
JAIBAD010000020.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_25276_length_32567_cov_7.988070, whole genome shotgun sequence 32,567
JAIBAD010000021.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_28174_length_30370_cov_6.409384, whole genome shotgun sequence 30,370
JAIBAD010000022.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_29814_length_29274_cov_5.418877, whole genome shotgun sequence 29,274
JAIBAD010000023.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_30639_length_28766_cov_5.325675, whole genome shotgun sequence 28,766
JAIBAD010000024.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_31671_length_28164_cov_5.499197, whole genome shotgun sequence 28,164
JAIBAD010000025.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_36634_length_25606_cov_5.929864, whole genome shotgun sequence 25,552
JAIBAD010000026.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_37037_length_25420_cov_6.328431, whole genome shotgun sequence 25,420
JAIBAD010000027.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_39726_length_24286_cov_5.195993, whole genome shotgun sequence 24,286
JAIBAD010000028.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_42514_length_23200_cov_5.394140, whole genome shotgun sequence 23,200
JAIBAD010000029.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_44212_length_22629_cov_7.237757, whole genome shotgun sequence 22,629
JAIBAD010000030.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_45788_length_22118_cov_6.032741, whole genome shotgun sequence 22,118
JAIBAD010000031.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_46837_length_21805_cov_7.384676, whole genome shotgun sequence 21,805
JAIBAD010000032.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_50818_length_20663_cov_5.888878, whole genome shotgun sequence 20,663
JAIBAD010000033.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_52010_length_20356_cov_4.993920, whole genome shotgun sequence 20,356
JAIBAD010000034.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_52326_length_20273_cov_5.939790, whole genome shotgun sequence 20,273
JAIBAD010000035.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_59734_length_18516_cov_5.845070, whole genome shotgun sequence 18,516
JAIBAD010000036.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_59786_length_18504_cov_4.920716, whole genome shotgun sequence 18,504
JAIBAD010000037.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_60965_length_18250_cov_6.498648, whole genome shotgun sequence 18,250
JAIBAD010000038.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_61984_length_18048_cov_5.319123, whole genome shotgun sequence 18,048
JAIBAD010000039.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_64399_length_17565_cov_5.996273, whole genome shotgun sequence 17,565
JAIBAD010000040.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_67798_length_16953_cov_6.353085, whole genome shotgun sequence 16,953
JAIBAD010000041.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_81853_length_14856_cov_7.905493, whole genome shotgun sequence 14,856
JAIBAD010000042.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_88516_length_14078_cov_5.235969, whole genome shotgun sequence 14,078
JAIBAD010000043.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_93892_length_13496_cov_6.244671, whole genome shotgun sequence 13,496
JAIBAD010000044.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_99144_length_12986_cov_6.496695, whole genome shotgun sequence 12,986
JAIBAD010000045.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_100739_length_12843_cov_6.354829, whole genome shotgun sequence 12,843
JAIBAD010000046.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_100867_length_12832_cov_7.658717, whole genome shotgun sequence 12,782
JAIBAD010000047.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_103134_length_12628_cov_5.699864, whole genome shotgun sequence 12,572
JAIBAD010000048.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_111664_length_11954_cov_5.756828, whole genome shotgun sequence 11,954
JAIBAD010000049.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_113213_length_11841_cov_6.269677, whole genome shotgun sequence 11,841
JAIBAD010000050.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_116708_length_11589_cov_6.161490, whole genome shotgun sequence 11,589
JAIBAD010000051.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_117229_length_11552_cov_6.021007, whole genome shotgun sequence 11,552
JAIBAD010000052.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_118058_length_11496_cov_4.637963, whole genome shotgun sequence 11,496
JAIBAD010000053.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_121764_length_11246_cov_5.945769, whole genome shotgun sequence 11,246
JAIBAD010000054.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_123153_length_11159_cov_5.783629, whole genome shotgun sequence 11,159
JAIBAD010000055.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_136277_length_10381_cov_6.806710, whole genome shotgun sequence 10,381
JAIBAD010000056.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_141238_length_10114_cov_5.209973, whole genome shotgun sequence 10,114
JAIBAD010000057.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_144701_length_9936_cov_6.240799, whole genome shotgun sequence 9,936
JAIBAD010000058.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_170926_length_8797_cov_6.599539, whole genome shotgun sequence 8,797
JAIBAD010000059.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_201070_length_7822_cov_6.560234, whole genome shotgun sequence 7,822
JAIBAD010000060.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_222758_length_7257_cov_5.350351, whole genome shotgun sequence 7,257
JAIBAD010000061.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_276150_length_6215_cov_5.190867, whole genome shotgun sequence 6,215
JAIBAD010000062.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_284166_length_6091_cov_5.377767, whole genome shotgun sequence 6,091
JAIBAD010000063.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_291625_length_5980_cov_7.309585, whole genome shotgun sequence 5,980
JAIBAD010000064.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_326448_length_5517_cov_5.718553, whole genome shotgun sequence 5,517
JAIBAD010000065.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_331169_length_5461_cov_5.952381, whole genome shotgun sequence 5,461
JAIBAD010000066.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_396559_length_4806_cov_7.798247, whole genome shotgun sequence 4,806
JAIBAD010000067.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_432993_length_4519_cov_4.444900, whole genome shotgun sequence 4,519
JAIBAD010000068.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_455623_length_4361_cov_6.624232, whole genome shotgun sequence 4,361
JAIBAD010000069.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_469737_length_4269_cov_5.713665, whole genome shotgun sequence 4,269
JAIBAD010000070.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_485252_length_4172_cov_4.264030, whole genome shotgun sequence 4,172
JAIBAD010000071.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_492674_length_4128_cov_4.674081, whole genome shotgun sequence 4,128
JAIBAD010000072.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_507531_length_4044_cov_4.901966, whole genome shotgun sequence 4,044
JAIBAD010000073.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_543734_length_3854_cov_5.295412, whole genome shotgun sequence 3,854
JAIBAD010000074.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_607184_length_3569_cov_5.764962, whole genome shotgun sequence 3,569
JAIBAD010000075.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_630640_length_3476_cov_5.319200, whole genome shotgun sequence 3,476
JAIBAD010000076.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_713795_length_3191_cov_7.812990, whole genome shotgun sequence 3,191
JAIBAD010000077.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_808577_length_2930_cov_6.316447, whole genome shotgun sequence 2,930
JAIBAD010000078.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_845737_length_2841_cov_6.261606, whole genome shotgun sequence 2,841
JAIBAD010000079.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_868120_length_2791_cov_5.132508, whole genome shotgun sequence 2,791
JAIBAD010000080.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_895568_length_2733_cov_4.295856, whole genome shotgun sequence 2,733
JAIBAD010000081.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_963604_length_2600_cov_5.027901, whole genome shotgun sequence 2,600
JAIBAD010000082.1 MAG: Alphaproteobacteria bacterium isolate SSF54 NODE_1006150_length_2525_cov_4.803169, whole genome shotgun sequence 2,525

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory