fast.genomicscompare 6,575 genera of bacteria & archaea

 

JAFLBE01 sp020161835 BAC1

Genome identifier: GCA_020161835.1

NCBI assembly name: ASM2016183v1

GTDB taxonomy: Bacteria, Bacteroidota, JABWAT01, JABWAT01, JABWAT01, JAFLBE01, JAFLBE01 sp020161835

NCBI taxonomy: Bacteria, Bacteroidota

Scaffolds: 36

Genes: 3,626 Protein-coding: 3,555 RNAs: 49 pseudogenes: 22

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAIUNL010000001.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_36_length_615983_cov_1.86026, whole genome shotgun sequence 615,983
JAIUNL010000002.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_110_length_344416_cov_1.5445, whole genome shotgun sequence 344,416
JAIUNL010000003.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_165_length_287961_cov_1.76042, whole genome shotgun sequence 287,961
JAIUNL010000004.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_195_length_257611_cov_1.78284, whole genome shotgun sequence 257,611
JAIUNL010000005.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_230_length_234390_cov_1.50223, whole genome shotgun sequence 234,390
JAIUNL010000006.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_292_length_199393_cov_1.72652, whole genome shotgun sequence 199,393
JAIUNL010000007.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_316_length_185982_cov_1.6822, whole genome shotgun sequence 185,982
JAIUNL010000008.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_321_length_184231_cov_1.50499, whole genome shotgun sequence 184,231
JAIUNL010000009.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_386_length_159955_cov_1.59727, whole genome shotgun sequence 159,955
JAIUNL010000010.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_410_length_154299_cov_1.66826, whole genome shotgun sequence 154,299
JAIUNL010000011.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_416_length_152887_cov_1.51332, whole genome shotgun sequence 152,887
JAIUNL010000012.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_418_length_152538_cov_1.60092, whole genome shotgun sequence 152,538
JAIUNL010000013.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_449_length_145381_cov_1.57072, whole genome shotgun sequence 145,381
JAIUNL010000014.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_467_length_141313_cov_1.6439, whole genome shotgun sequence 141,313
JAIUNL010000015.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_500_length_135314_cov_1.67658, whole genome shotgun sequence 135,314
JAIUNL010000016.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_546_length_124562_cov_1.90548, whole genome shotgun sequence 124,562
JAIUNL010000017.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_651_length_104946_cov_1.49979, whole genome shotgun sequence 104,946
JAIUNL010000018.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_675_length_102051_cov_1.70662, whole genome shotgun sequence 102,051
JAIUNL010000019.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_698_length_100241_cov_1.89401, whole genome shotgun sequence 100,241
JAIUNL010000020.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_851_length_84294_cov_2.70218, whole genome shotgun sequence 84,294
JAIUNL010000021.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_1212_length_56460_cov_1.41533, whole genome shotgun sequence 56,460
JAIUNL010000022.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_1247_length_54433_cov_1.54819, whole genome shotgun sequence 54,433
JAIUNL010000023.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_1274_length_53355_cov_1.7754, whole genome shotgun sequence 53,355
JAIUNL010000024.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_1353_length_49897_cov_1.58375, whole genome shotgun sequence 49,897
JAIUNL010000025.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_1359_length_49658_cov_1.57558, whole genome shotgun sequence 49,658
JAIUNL010000026.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_1526_length_43376_cov_1.54281, whole genome shotgun sequence 43,376
JAIUNL010000027.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_1698_length_38502_cov_1.92331, whole genome shotgun sequence 38,502
JAIUNL010000028.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_1974_length_32355_cov_1.54921, whole genome shotgun sequence 32,355
JAIUNL010000029.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_2044_length_31094_cov_1.54833, whole genome shotgun sequence 31,094
JAIUNL010000030.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_2285_length_27684_cov_1.67798, whole genome shotgun sequence 27,684
JAIUNL010000031.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_2310_length_27298_cov_1.77112, whole genome shotgun sequence 27,298
JAIUNL010000032.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_2394_length_26267_cov_1.53286, whole genome shotgun sequence 26,267
JAIUNL010000033.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_3859_length_16208_cov_1.2095, whole genome shotgun sequence 16,208
JAIUNL010000034.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_4571_length_13695_cov_1.59161, whole genome shotgun sequence 13,695
JAIUNL010000035.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_6707_length_9530_cov_1.44103, whole genome shotgun sequence 9,530
JAIUNL010000036.1 MAG: Bacteroidetes bacterium isolate BAC1 spades-bin.60~NODE_13957_length_4784_cov_1.64784, whole genome shotgun sequence 4,784

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory