fast.genomicscompare 6,575 genera of bacteria & archaea

 

BM516 sp020444325 MAG18

Genome identifier: GCA_020444325.1

NCBI assembly name: ASM2044432v1

GTDB taxonomy: Bacteria, Bacteroidota, SZUA-365, SZUA-365, SZUA-365, BM516, BM516 sp020444325

NCBI taxonomy: Bacteria

Scaffolds: 25

Genes: 3,610 Protein-coding: 3,549 RNAs: 52 pseudogenes: 9

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JAHLLD010000001.1 MAG: bacterium isolate MAG18 NODE_38_length_711756_cov_530.946003, whole genome shotgun sequence 711,756
JAHLLD010000002.1 MAG: bacterium isolate MAG18 NODE_62_length_524983_cov_491.001360, whole genome shotgun sequence 524,983
JAHLLD010000003.1 MAG: bacterium isolate MAG18 NODE_75_length_475162_cov_479.748591, whole genome shotgun sequence 475,162
JAHLLD010000004.1 MAG: bacterium isolate MAG18 NODE_111_length_353643_cov_497.547207, whole genome shotgun sequence 353,643
JAHLLD010000005.1 MAG: bacterium isolate MAG18 NODE_115_length_349909_cov_573.701115, whole genome shotgun sequence 349,909
JAHLLD010000006.1 MAG: bacterium isolate MAG18 NODE_198_length_236621_cov_496.966318, whole genome shotgun sequence 236,621
JAHLLD010000007.1 MAG: bacterium isolate MAG18 NODE_224_length_225286_cov_528.347199, whole genome shotgun sequence 225,286
JAHLLD010000008.1 MAG: bacterium isolate MAG18 NODE_236_length_215342_cov_509.738145, whole genome shotgun sequence 215,342
JAHLLD010000009.1 MAG: bacterium isolate MAG18 NODE_305_length_184601_cov_498.013162, whole genome shotgun sequence 184,601
JAHLLD010000010.1 MAG: bacterium isolate MAG18 NODE_336_length_171506_cov_495.116663, whole genome shotgun sequence 171,506
JAHLLD010000011.1 MAG: bacterium isolate MAG18 NODE_354_length_167525_cov_467.311739, whole genome shotgun sequence 167,525
JAHLLD010000012.1 MAG: bacterium isolate MAG18 NODE_375_length_162425_cov_475.798325, whole genome shotgun sequence 162,425
JAHLLD010000013.1 MAG: bacterium isolate MAG18 NODE_424_length_149648_cov_512.787537, whole genome shotgun sequence 149,648
JAHLLD010000014.1 MAG: bacterium isolate MAG18 NODE_426_length_149436_cov_483.528742, whole genome shotgun sequence 149,436
JAHLLD010000015.1 MAG: bacterium isolate MAG18 NODE_448_length_143970_cov_514.036772, whole genome shotgun sequence 143,970
JAHLLD010000016.1 MAG: bacterium isolate MAG18 NODE_497_length_134237_cov_496.033991, whole genome shotgun sequence 134,237
JAHLLD010000017.1 MAG: bacterium isolate MAG18 NODE_867_length_88688_cov_505.252502, whole genome shotgun sequence 88,688
JAHLLD010000018.1 MAG: bacterium isolate MAG18 NODE_1728_length_47242_cov_500.778837, whole genome shotgun sequence 47,242
JAHLLD010000019.1 MAG: bacterium isolate MAG18 NODE_1805_length_45480_cov_474.942741, whole genome shotgun sequence 45,480
JAHLLD010000020.1 MAG: bacterium isolate MAG18 NODE_2091_length_39466_cov_506.778793, whole genome shotgun sequence 39,466
JAHLLD010000021.1 MAG: bacterium isolate MAG18 NODE_2974_length_26867_cov_713.532224, whole genome shotgun sequence 26,867
JAHLLD010000022.1 MAG: bacterium isolate MAG18 NODE_4454_length_17109_cov_477.555471, whole genome shotgun sequence 17,109
JAHLLD010000023.1 MAG: bacterium isolate MAG18 NODE_4464_length_17090_cov_478.190490, whole genome shotgun sequence 17,090
JAHLLD010000024.1 MAG: bacterium isolate MAG18 NODE_13623_length_5026_cov_519.399920, whole genome shotgun sequence 5,026
JAHLLD010000025.1 MAG: bacterium isolate MAG18 NODE_19913_length_3349_cov_492.586825, whole genome shotgun sequence 3,349

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory