fast.genomicscompare 6,575 genera of bacteria & archaea

 

JACKAQ01 sp020634975 HK-STAS-CALD-3

Genome identifier: GCA_020634975.1

NCBI assembly name: ASM2063497v1

GTDB taxonomy: Bacteria, Calditrichota, Calditrichia, RBG-13-44-9, J042, JACKAQ01, JACKAQ01 sp020634975

NCBI taxonomy: Bacteria, Calditrichota, Calditrichia

Scaffolds: 19

Genes: 4,811 Protein-coding: 4,688 RNAs: 52 pseudogenes: 71

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JACKAQ010000001.1 MAG: Calditrichia bacterium isolate HK-STAS-CALD-3 HK-STAS-CALD-3_1, whole genome shotgun sequence 3,537,981
JACKAQ010000002.1 MAG: Calditrichia bacterium isolate HK-STAS-CALD-3 HK-STAS-CALD-3_2, whole genome shotgun sequence 803,634
JACKAQ010000003.1 MAG: Calditrichia bacterium isolate HK-STAS-CALD-3 HK-STAS-CALD-3_3, whole genome shotgun sequence 588,171
JACKAQ010000004.1 MAG: Calditrichia bacterium isolate HK-STAS-CALD-3 HK-STAS-CALD-3_4, whole genome shotgun sequence 379,475
JACKAQ010000005.1 MAG: Calditrichia bacterium isolate HK-STAS-CALD-3 HK-STAS-CALD-3_5, whole genome shotgun sequence 166,422
JACKAQ010000006.1 MAG: Calditrichia bacterium isolate HK-STAS-CALD-3 HK-STAS-CALD-3_6, whole genome shotgun sequence 137,485
JACKAQ010000007.1 MAG: Calditrichia bacterium isolate HK-STAS-CALD-3 HK-STAS-CALD-3_7, whole genome shotgun sequence 121,520
JACKAQ010000008.1 MAG: Calditrichia bacterium isolate HK-STAS-CALD-3 HK-STAS-CALD-3_8, whole genome shotgun sequence 101,670
JACKAQ010000009.1 MAG: Calditrichia bacterium isolate HK-STAS-CALD-3 HK-STAS-CALD-3_9, whole genome shotgun sequence 41,878
JACKAQ010000010.1 MAG: Calditrichia bacterium isolate HK-STAS-CALD-3 HK-STAS-CALD-3_10, whole genome shotgun sequence 32,237
JACKAQ010000011.1 MAG: Calditrichia bacterium isolate HK-STAS-CALD-3 HK-STAS-CALD-3_11, whole genome shotgun sequence 10,635
JACKAQ010000012.1 MAG: Calditrichia bacterium isolate HK-STAS-CALD-3 HK-STAS-CALD-3_12, whole genome shotgun sequence 4,231
JACKAQ010000013.1 MAG: Calditrichia bacterium isolate HK-STAS-CALD-3 HK-STAS-CALD-3_13, whole genome shotgun sequence 2,606
JACKAQ010000014.1 MAG: Calditrichia bacterium isolate HK-STAS-CALD-3 HK-STAS-CALD-3_14, whole genome shotgun sequence 1,889
JACKAQ010000015.1 MAG: Calditrichia bacterium isolate HK-STAS-CALD-3 HK-STAS-CALD-3_15, whole genome shotgun sequence 1,881
JACKAQ010000016.1 MAG: Calditrichia bacterium isolate HK-STAS-CALD-3 HK-STAS-CALD-3_16, whole genome shotgun sequence 1,861
JACKAQ010000017.1 MAG: Calditrichia bacterium isolate HK-STAS-CALD-3 HK-STAS-CALD-3_17, whole genome shotgun sequence 1,665
JACKAQ010000018.1 MAG: Calditrichia bacterium isolate HK-STAS-CALD-3 HK-STAS-CALD-3_18, whole genome shotgun sequence 1,586
JACKAQ010000019.1 MAG: Calditrichia bacterium isolate HK-STAS-CALD-3 HK-STAS-CALD-3_19, whole genome shotgun sequence 2,032

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory