fast.genomicscompare 6,575 genera of bacteria & archaea

 

JACKJF01 sp020638095 HK-STAS-PROT-32

Genome identifier: GCA_020638095.1

NCBI assembly name: ASM2063809v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Devosiaceae, JACKJF01, JACKJF01 sp020638095

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Hyphomicrobiaceae

Scaffolds: 8

Genes: 2,850 Protein-coding: 2,782 RNAs: 52 pseudogenes: 16

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JACKJF010000001.1 MAG: Hyphomicrobiaceae bacterium isolate HK-STAS-PROT-32 HK-STAS-PROT-32_1, whole genome shotgun sequence 30,948
JACKJF010000002.1 MAG: Hyphomicrobiaceae bacterium isolate HK-STAS-PROT-32 HK-STAS-PROT-32_2, whole genome shotgun sequence 3,078
JACKJF010000003.1 MAG: Hyphomicrobiaceae bacterium isolate HK-STAS-PROT-32 HK-STAS-PROT-32_3, whole genome shotgun sequence 1,534,183
JACKJF010000004.1 MAG: Hyphomicrobiaceae bacterium isolate HK-STAS-PROT-32 HK-STAS-PROT-32_4, whole genome shotgun sequence 938,309
JACKJF010000005.1 MAG: Hyphomicrobiaceae bacterium isolate HK-STAS-PROT-32 HK-STAS-PROT-32_5, whole genome shotgun sequence 250,365
JACKJF010000006.1 MAG: Hyphomicrobiaceae bacterium isolate HK-STAS-PROT-32 HK-STAS-PROT-32_6, whole genome shotgun sequence 110,967
JACKJF010000007.1 MAG: Hyphomicrobiaceae bacterium isolate HK-STAS-PROT-32 HK-STAS-PROT-32_7, whole genome shotgun sequence 36,158
JACKJF010000008.1 MAG: Hyphomicrobiaceae bacterium isolate HK-STAS-PROT-32 HK-STAS-PROT-32_8, whole genome shotgun sequence 16,117

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory