fast.genomicscompare 6,575 genera of bacteria & archaea

 

JAJXWB01 sp020638195 HK-STAS-PROT-29

Genome identifier: GCA_020638195.1

NCBI assembly name: ASM2063819v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Beijerinckiaceae, JAJXWB01, JAJXWB01 sp020638195

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Methylobacteriaceae

Scaffolds: 9

Genes: 4,263 Protein-coding: 4,161 RNAs: 63 pseudogenes: 39

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JACKJC010000001.1 MAG: Methylobacteriaceae bacterium isolate HK-STAS-PROT-29 HK-STAS-PROT-29_1, whole genome shotgun sequence 1,279,874
JACKJC010000002.1 MAG: Methylobacteriaceae bacterium isolate HK-STAS-PROT-29 HK-STAS-PROT-29_2, whole genome shotgun sequence 1,116,476
JACKJC010000003.1 MAG: Methylobacteriaceae bacterium isolate HK-STAS-PROT-29 HK-STAS-PROT-29_3, whole genome shotgun sequence 593,908
JACKJC010000004.1 MAG: Methylobacteriaceae bacterium isolate HK-STAS-PROT-29 HK-STAS-PROT-29_4, whole genome shotgun sequence 567,369
JACKJC010000005.1 MAG: Methylobacteriaceae bacterium isolate HK-STAS-PROT-29 HK-STAS-PROT-29_5, whole genome shotgun sequence 478,343
JACKJC010000006.1 MAG: Methylobacteriaceae bacterium isolate HK-STAS-PROT-29 HK-STAS-PROT-29_6, whole genome shotgun sequence 177,565
JACKJC010000007.1 MAG: Methylobacteriaceae bacterium isolate HK-STAS-PROT-29 HK-STAS-PROT-29_7, whole genome shotgun sequence 61,393
JACKJC010000008.1 MAG: Methylobacteriaceae bacterium isolate HK-STAS-PROT-29 HK-STAS-PROT-29_8, whole genome shotgun sequence 8,636
JACKJC010000009.1 MAG: Methylobacteriaceae bacterium isolate HK-STAS-PROT-29 HK-STAS-PROT-29_9, whole genome shotgun sequence 8,380

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory