fast.genomicscompare 6,575 genera of bacteria & archaea

 

JAGREO01 sp020638465 HK-STAS-PROT-10

Genome identifier: GCA_020638465.1

NCBI assembly name: ASM2063846v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Geminicoccales, Geminicoccaceae, JAGREO01, JAGREO01 sp020638465

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodospirillales, Geminicoccaceae

Scaffolds: 5

Genes: 4,312 Protein-coding: 4,195 RNAs: 62 pseudogenes: 55

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JACKIM010000001.1 MAG: Geminicoccaceae bacterium isolate HK-STAS-PROT-10 HK-STAS-PROT-10_1, whole genome shotgun sequence 2,184,353
JACKIM010000002.1 MAG: Geminicoccaceae bacterium isolate HK-STAS-PROT-10 HK-STAS-PROT-10_2, whole genome shotgun sequence 2,001,765
JACKIM010000003.1 MAG: Geminicoccaceae bacterium isolate HK-STAS-PROT-10 HK-STAS-PROT-10_3, whole genome shotgun sequence 394,765
JACKIM010000004.1 MAG: Geminicoccaceae bacterium isolate HK-STAS-PROT-10 HK-STAS-PROT-10_4, whole genome shotgun sequence 15,727
JACKIM010000005.1 MAG: Geminicoccaceae bacterium isolate HK-STAS-PROT-10 HK-STAS-PROT-10_5, whole genome shotgun sequence 1,547

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory